| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,961,613 – 9,961,717 |
| Length | 104 |
| Max. P | 0.692612 |
| Location | 9,961,613 – 9,961,717 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.35 |
| Mean single sequence MFE | -18.78 |
| Consensus MFE | -13.02 |
| Energy contribution | -12.18 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9961613 104 + 27905053 CCAACAAAAAAAAACUUGGCUAAAUGGUUUGCCAUUAAUUUUUCGUGGCAUGCCGGUUAUUAACCUACCU---GCCUGUUACCUGUU--ACCUGCUAUAUACUUUUCCC ............(((..(((.....(((.((((((.........)))))).)))(((.....))).....---))).))).......--.................... ( -19.20) >DroPse_CAF1 42987 96 + 1 ---------GAAAACUUGGCUAAAUGGUUUGCUAUUAAUUUUUCGUGGCAUGUCGGUUAUUAACCUGCCUCCUGUUUGCUACCUCUUCUGCUUGCUAU----UUUCUGC ---------(((((..((((..(((((....)))))........((((((.(..(((.........)))..)....))))))...........)))))----))))... ( -17.10) >DroSec_CAF1 44238 103 + 1 CAAACAAAAAAAAACUUGGCUAAAUGGUUUGCCAUUAAUUUUUCGUGGCAUGCCGGUUAUUAACCUACCU---GCCUGUUACCUGUU--ACCUGCUAUAUACUUUUC-C ............(((..(((.....(((.((((((.........)))))).)))(((.....))).....---))).))).......--..................-. ( -19.20) >DroEre_CAF1 48725 99 + 1 CAAAAA-----AAACUUGGCUAAAUGGCUUGCCAUUAAUUUUUCGUGGCAUGCCGGUUAUUAACCUACCU---GCCUGUUACCUGUU--ACCUGGUAUAUACUUUUCCC ......-----.(((..(((.....(((.((((((.........)))))).)))(((.....))).....---))).)))(((....--....)))............. ( -23.00) >DroAna_CAF1 49455 88 + 1 CA-----AAAAAAACUUGGCUAAAUGGUUUGCCAUUAAUUUUUCGAGGCAUGUCGGUUAUUAACCUGCCU---GCUUGUUUGCUACC--AC-----------UUCUUUC ..-----.........((((..(((((....))))).........(((((.((.(((.....))).)).)---))))....))))..--..-----------....... ( -17.10) >DroPer_CAF1 43759 96 + 1 ---------GAAAACUUGGCUAAAUGGUUUGCUAUUAAUUUUUCGUGGCAUGUCGGUUAUUAACCUGCCUCCUGUUUGCUACCUCUUCUGCUUGCUAU----UUUCUGC ---------(((((..((((..(((((....)))))........((((((.(..(((.........)))..)....))))))...........)))))----))))... ( -17.10) >consensus CA_______AAAAACUUGGCUAAAUGGUUUGCCAUUAAUUUUUCGUGGCAUGCCGGUUAUUAACCUACCU___GCCUGUUACCUGUU__ACCUGCUAU____UUUUCCC ............(((..(((.....(((.((((((.........)))))).)))(((.........)))....))).)))............................. (-13.02 = -12.18 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:05 2006