| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,951,557 – 9,951,662 |
| Length | 105 |
| Max. P | 0.550331 |
| Location | 9,951,557 – 9,951,662 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -12.90 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9951557 105 + 27905053 ACAUUUGUUGUGAAAUUUUCUACGUUUUUACAAUUUAAUUCAUUGCAAAUCCAAUUUAUUGUUAUUUACUUGAACGCAUAAAGUGCUUCUGCACUUUAGAAAACU ......(((((((((..........)))))))))....(((..(((.....(((....)))(((......)))..)))((((((((....))))))))))).... ( -16.50) >DroSec_CAF1 34135 105 + 1 ACAUUUGUUGUGAAAUUUUCUACGUUUUUACAAUUUAAUUCAUAACAAAUCCAAUUUAUUGUUAUUUACUUGAUCGCAUAAAGUGCUUCUGCACUUUGGAAAACU ...(((((((((((........................)))))))))))(((.......(((.(((.....))).))).(((((((....))))))))))..... ( -20.66) >DroSim_CAF1 34354 105 + 1 ACAUUUGUUGUGAAAUUUUCUACGUUUUUACAAUAUAAUUCAUAGCAAAUCCAAUUUAUUGUUAUUUACUUGAACGCAUAAAGUGCUUCUGCACUUUGGAAAACU ...(((((((((((........................)))))))))))((((((((((((((.........)))).)))))((((....)))).)))))..... ( -19.56) >DroEre_CAF1 38493 105 + 1 ACAUUUGUUGUGAAAUUUUCUGCAUUUUUACGAUUUAAUUCCUUGCAAACCCAAUUUAUUGAUAUUUGCAUGCACGUGUAAAGUGCUUCUGCACUUUGGGAAACU ......(((((((((..........)))))))))....((((.((((((..(((....)))...))))))........((((((((....))))))))))))... ( -22.50) >DroYak_CAF1 36761 105 + 1 ACAUUUGUUGUGAAAUUUUCUACGUUUUUACAAUUUAAUUCAUUGCAAAUCCAACUAAUUGAUAUUUGCAUGCACGUAUAAAGUGCUUCUGCACUUUGGGAAACU ......(((((((((..........)))))))))....(((..(((((((.(((....)))..)))))))........((((((((....)))))))).)))... ( -21.00) >DroAna_CAF1 39608 101 + 1 --AUUUGUUGUGAAAUAUUGU--GUUUUUAAAAGUUCAUUCGUCGCCGAACUGACCAAGUUUUGUCUUUUUCGACGAAUUGAGUGCCCCAGCACUUUUGACAACU --....(((((.(((....((--(((......(.((.((((((((..(((..(((........)))..))))))))))).)).).....))))).))).))))). ( -23.80) >consensus ACAUUUGUUGUGAAAUUUUCUACGUUUUUACAAUUUAAUUCAUUGCAAAUCCAAUUUAUUGUUAUUUACUUGAACGCAUAAAGUGCUUCUGCACUUUGGAAAACU ......(((((((((..........)))))))))............................................((((((((....))))))))....... (-12.90 = -13.18 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:02 2006