| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,419,283 – 1,419,404 |
| Length | 121 |
| Max. P | 0.999858 |
| Location | 1,419,283 – 1,419,388 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 97.14 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.44 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.98 |
| SVM decision value | 4.05 |
| SVM RNA-class probability | 0.999774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1419283 105 + 27905053 AUUGAAACACUCAAGAACAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACGCGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAA ........((.((((.((......)).)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))... ( -21.10) >DroSec_CAF1 1000 105 + 1 ACUGAAACACUCAAGAGCAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAA ........((.((((..(......)..)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))... ( -22.00) >DroSim_CAF1 1000 105 + 1 ACUGAAACACUCAAGAGCAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUAUCCGAUAUAUAUGUCUGUAUGCCAA ........((.((((..(......)..)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))... ( -22.20) >DroEre_CAF1 983 105 + 1 ACUGAAACACUCAAGAACAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGCAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAA ........((.((((.((......)).)))).))..(((...(((.....)))...........(((.(((((((((((....))))))))))).))).)))... ( -19.80) >DroYak_CAF1 989 105 + 1 ACUGAAACACUCAAGAAUAUUUCGGUCCUUGUGUACGCAACAGUUAUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAA ........((.((((.((......)).)))).))..(((...(((((....)))))........(((.(((((((((((....))))))))))).))).)))... ( -19.70) >consensus ACUGAAACACUCAAGAACAUUUCGGUCCUUGUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAA ........((.((((.((......)).)))).))..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))... (-20.64 = -20.44 + -0.20)
| Location | 1,419,313 – 1,419,404 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 97.80 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.34 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.97 |
| SVM decision value | 4.28 |
| SVM RNA-class probability | 0.999858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1419313 91 + 27905053 GUGUACGCAACAGUUUUAAUAGUAACCACACUAAACGCGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUAUUAUAUAGUU ((((..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))..))))............. ( -17.80) >DroSec_CAF1 1030 91 + 1 GUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUU ((((..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))..))))............. ( -17.80) >DroSim_CAF1 1030 91 + 1 GUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUAUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUU ((((..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))..))))............. ( -18.00) >DroEre_CAF1 1013 91 + 1 GUGUACGCAACAGUUUUAAUAGCAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUU ((((..(((...(((.....)))...........(((.(((((((((((....))))))))))).))).)))..))))............. ( -16.50) >DroYak_CAF1 1019 91 + 1 GUGUACGCAACAGUUAUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUU ((((..(((...(((((....)))))........(((.(((((((((((....))))))))))).))).)))..))))............. ( -18.00) >consensus GUGUACGCAACAGUUUUAAUAGUAACCACACUAAACACGCAUAUAUAUUCUCCGAUAUAUAUGUCUGUAUGCCAAUACUUACUAUAUAGUU ((((..(((((((......((((......)))).....(((((((((((....))))))))))))))).)))..))))............. (-17.14 = -17.34 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:31 2006