Locus 3668

Sequence ID 3R_DroMel_CAF1
Location 9,938,615 – 9,938,710
Length 95
Max. P 0.790589
window5890

overview

Window 0

Location 9,938,615 – 9,938,710
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 74.57
Mean single sequence MFE -30.40
Consensus MFE -21.01
Energy contribution -20.52
Covariance contribution -0.50
Combinations/Pair 1.38
Mean z-score -1.19
Structure conservation index 0.69
SVM decision value 0.59
SVM RNA-class probability 0.790589
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9938615 95 + 27905053
UCCCAAAAUGA--AUCCUUACCCCGCAGUAUAGAUGGGCGGUAGUUUCCGUUCAUAGUUGCUGGUGCUGGGUGUUACCACGCCAGCAUGUAUCUCCU
...........--............(((((...((((((((......))))))))...)))))((((((((((....))).)))))))......... ( -31.30)
>DroPse_CAF1 20024 91 + 1
----GGAUUGG--CCUGUUACCCCGCUGUAUAGAUGGGCGGCAGCUUCUUCUCGUAGCUGCUGGUGCUAGGCGUGACGACGCCCGCAUGGAUUUCCU
----(((....--((......((((((....)).))))((((((((.(.....).))))))))((((..(((((....))))).))))))...))). ( -33.10)
>DroGri_CAF1 24469 90 + 1
-----AUAG--GGUGGGUUACCCAGCUGUGUAGAUGGGCGGCAGCUUCUUCUCAUAGUUGCCCGUGCUUGGUGUGACAACGCCGGCAUGAAUCUCCU
-----...(--((((((...)))(((((((.(((.((((....))))..))))))))))))))(((((.(((((....))))))))))......... ( -34.80)
>DroWil_CAF1 22891 89 + 1
------AUCGU--UCUCCUACCCAGCUGUGUAAAUGGGUGGCAGCUUCUUUUCAUAGCUACUGGUACUGGGUGUAACCACACCGGCAUGAAUUUCCU
------...((--((.((((((.(((((((.(((..(((....)))..))).)))))))...))))...(((((....)))))))...))))..... ( -24.40)
>DroYak_CAF1 23741 87 + 1
UACCAAA----------UUACCCCGCUGUAUAGAUGGGCGGUAGUUUCCGUUCGUAGCUGCUGGUGCUGGGUGUGACCACGCCAGCAUGUAUCUCCU
.......----------................((((((((......)))))))).((((((((((.(((......))))))))))).))....... ( -28.70)
>DroPer_CAF1 19972 91 + 1
----CGAUUGG--CCUGUUACCCCGCUGUGUAGAUGGGCGGCAGCUUCUUCUCGUAGCUGCUGGUGCUAGGCGUUACGACGCCCGCAUGGAUUUCCU
----......(--((((((((........)).)))))))(((((((.(.....).))))))).((((..(((((....))))).))))((....)). ( -30.10)
>consensus
_____AAUUG___CCUGUUACCCCGCUGUAUAGAUGGGCGGCAGCUUCUUCUCAUAGCUGCUGGUGCUGGGUGUGACCACGCCAGCAUGAAUCUCCU
....................(((............)))((((((((.........))))))))(((((.(((((....))))))))))......... (-21.01 = -20.52 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:57 2006