Locus 3666

Sequence ID 3R_DroMel_CAF1
Location 9,932,940 – 9,933,046
Length 106
Max. P 0.880275
window5888

overview

Window 8

Location 9,932,940 – 9,933,046
Length 106
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -35.17
Consensus MFE -24.08
Energy contribution -26.22
Covariance contribution 2.14
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 0.68
SVM decision value 0.91
SVM RNA-class probability 0.880275
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9932940 106 + 27905053
ACCAUCCGCAAUUGCAGCAGGUCAUUGUACGAAAGGUAGGACAUGAUCUCUAGCCACAUCUCGUUAGGCAGCAGUUCGAUGGCGGCUUUGGAGGAACCCUCCUUAU-------------
.(((((.(.((((((.(((((((((.((.(....).....)))))))))(((((........))))))).)))))))))))).......(((((...)))))....------------- ( -32.70)
>DroPse_CAF1 15267 101 + 1
ACCAUCCGCAGCUGCUUAAGAUCGUUGUAGGUCAGAUAGGACAUCACCUCCAGCCACAUCUCGUUGGGCAGCAUAUCGAUGGGAACUUUUUUC-----UUCCGCAC-------------
.(((((....((((((((((((.((((.((((..(((.....))))))).))))...))))...)))))))).....)))))...........-----........------------- ( -27.00)
>DroSec_CAF1 15651 106 + 1
ACCAUGCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGACCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUGGAGGAACACUCCUUAU-------------
.((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........)))))))))))))))))))).......((((.....))))....------------- ( -41.60)
>DroSim_CAF1 15917 106 + 1
ACCAUGCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGAUCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUGGAGGAACACUCCUUAU-------------
.((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........)))))))))))))))))))).......((((.....))))....------------- ( -39.00)
>DroEre_CAF1 16279 119 + 1
ACCAUGCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGAUCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUUGGGUGACCCUCUAUAUCCUUAUCCUUAUC
.((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........))))))))))))))))))))........((....))..................... ( -37.10)
>DroPer_CAF1 15242 101 + 1
ACCAUCCGCAGCUGCUUGAGAUCGUUGUAGGUCAGAUAGGACAUGACCUCCAGCCACAUCUCGUUGGGCAGCAUAUCGAUGGGAACUUUUUUC-----UUCCUCAC-------------
.(((((....((((((((((((.((((.((((((.........)))))).))))...))))))...)))))).....)))))...........-----........------------- ( -33.60)
>consensus
ACCAUCCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGACCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUGGAGGAAC_CUCCUUAU_____________
.((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........))))))))))))))))))))..................................... (-24.08 = -26.22 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:55 2006