Locus 3665

Sequence ID 3R_DroMel_CAF1
Location 9,926,976 – 9,927,096
Length 120
Max. P 0.732962
window5887

overview

Window 7

Location 9,926,976 – 9,927,096
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.08
Mean single sequence MFE -31.30
Consensus MFE -30.37
Energy contribution -30.70
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.97
SVM decision value 0.43
SVM RNA-class probability 0.732962
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9926976 120 - 27905053
CAUCCCCACGUCACUGACUUUUACCGCCCCCCCCUCCCCUUUAGUGGCCGUGGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC
.....((((((((((((.......................))))))).))))).((((.((....((...((((((((..........))))))))...))..))))))........... ( -32.50)
>DroSec_CAF1 9660 117 - 1
CAUCCCCACGUCACUGACUUUUCCCGCCCCUCC---CCCUUUAGUGGCCGUUGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC
.........((((((((................---....))))))))(((...((((.((....((...((((((((..........))))))))...))..)))))).)))....... ( -28.75)
>DroSim_CAF1 9998 117 - 1
CAUCCCCACGUCACUGACUUUUCCCGCCCCUCU---CCCUUUAGUGGCCGUGGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC
.....((((((((((((................---....))))))).))))).((((.((....((...((((((((..........))))))))...))..))))))........... ( -32.65)
>consensus
CAUCCCCACGUCACUGACUUUUCCCGCCCCUCC___CCCUUUAGUGGCCGUGGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC
.....((((((((((((.......................))))))).))))).((((.((....((...((((((((..........))))))))...))..))))))........... (-30.37 = -30.70 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:54 2006