Locus 3661

Sequence ID 3R_DroMel_CAF1
Location 9,908,925 – 9,909,018
Length 93
Max. P 0.965824
window5880

overview

Window 0

Location 9,908,925 – 9,909,018
Length 93
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 69.74
Mean single sequence MFE -33.27
Consensus MFE -13.31
Energy contribution -14.20
Covariance contribution 0.89
Combinations/Pair 1.25
Mean z-score -2.24
Structure conservation index 0.40
SVM decision value 1.59
SVM RNA-class probability 0.965824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9908925 93 - 27905053
GUUUAACACGCUUGAUUUGAGCCGCAACCCACACCGCC-----CACCUG----------CCCACUUGGCCACUUGGCCACUUGGCCCUCAGGUGGGUUG--AGUGGGGAA
.........((((.....)))).....(((((.(.(((-----((((((----------.(((..(((((....)))))..)))....))))))))).)--.)))))... ( -43.30)
>DroPse_CAF1 134409 103 - 1
GUUUAACGCGCUUGAUUUGAGCUGCA-CCCACACCACAUAGCCAGCCAGCCGAACCACCCCCACA--ACC----ACCCACUCCACCUCCAGGUGGGCGGGCAGUGACCAA
.......((((((.....)))).)).-.......(((...((......))...............--...----.(((.(.(((((....)))))).)))..)))..... ( -23.30)
>DroSec_CAF1 112050 76 - 1
GUUUAACACGCUUGAUUUGAGCCGCA-CCCACACUGCC-----CACCU--------------------------GGCCACUUGGCUCCCAGGUGGGUUG--AGUGGGGAA
.........((((.....))))....-(((((.(.(((-----(((((--------------------------((((....)))...))))))))).)--.)))))... ( -34.80)
>DroSim_CAF1 115948 76 - 1
GUUUAACACGCUUGAUUUGAGCCGCA-CCCACACCGCC-----CACCU--------------------------GGCCACUUGGCCCUCAGGUGGGUUG--AGUGGGGAA
.........((((.....))))....-(((((.(.(((-----(((((--------------------------((((....))))...)))))))).)--.)))))... ( -35.50)
>DroEre_CAF1 113128 103 - 1
GUUUAACACGCUUGAUUUGAGCCGCA-CCCACACCGCUAGCACCGCCAGC---ACCGCCCCCACAUGGCCACUUGGCCACUUGGCCCUCAGGUGGGUUC--AGUCGGGA-
..........(((((((.(((((.((-((......(((.((...)).)))---.......(((..(((((....)))))..)))......)))))))))--))))))).- ( -36.60)
>DroYak_CAF1 116132 84 - 1
GUUUAACACGCUUGAUUUGAGUCGCA-CCCACACCGCU-----------------------CACCUGGUCACCUGGCCACUUGGCCCUAAGGUGGGUUG--AGUCGGGAA
........(((((.....))).))..-(((((.(.(((-----------------------(((((((...)).((((....))))...)))))))).)--.)).))).. ( -26.10)
>consensus
GUUUAACACGCUUGAUUUGAGCCGCA_CCCACACCGCC_____CACCU_____________CAC___GCC____GGCCACUUGGCCCUCAGGUGGGUUG__AGUGGGGAA
.........((((.....)))).....(((((..........................................((((....))))(((....)))......)))))... (-13.31 = -14.20 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:47 2006