Locus 3660

Sequence ID 3R_DroMel_CAF1
Location 9,908,553 – 9,908,643
Length 90
Max. P 0.597503
window5879

overview

Window 9

Location 9,908,553 – 9,908,643
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 85.52
Mean single sequence MFE -24.01
Consensus MFE -19.09
Energy contribution -19.53
Covariance contribution 0.45
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.80
SVM decision value 0.13
SVM RNA-class probability 0.597503
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9908553 90 - 27905053
CUGGCCUGCCAAGGUAGCAAAGUGGC-UCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC-
...((((....))))......((((.-.(((((.((..(((((((((((((......))))))...)))))))..)).)))))..))))..- ( -28.90)
>DroPse_CAF1 134001 81 - 1
C----GU-------UCGAAAAGUGGCCUCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCUAUAAUUUGAGUGAGCUCCUCACU
.----..-------......(((((...(((((.((..(((((((((((((......))))))...)))))))..)).)))))....))))) ( -18.60)
>DroSec_CAF1 111681 90 - 1
CUGGCCUGCCAAGGUAGCAGAGUGGC-UCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC-
(((((((....))))..))).((((.-.(((((.((..(((((((((((((......))))))...)))))))..)).)))))..))))..- ( -30.30)
>DroYak_CAF1 115751 90 - 1
CUGGCCUGCCAAGGUAGCAAAGUGGC-UCUUGCAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC-
...((((....))))......((((.-.((..(.((..(((((((((((((......))))))...)))))))..)).)..))..))))..- ( -28.30)
>DroAna_CAF1 112239 90 - 1
UCGUCCUGCCAAGGUAGCAAAGUGGCCUCUUACAUAUUUCAUGGCUUAGGUAAAUUGACUUAAUUUGCUAUAAUUUGAGUU-GCUCCGCCA-
............((((((((...((((...............))))..(((((((((...)))))))))..........))-)))..))).- ( -16.66)
>DroPer_CAF1 135721 88 - 1
C----GUUCGACGUUCGAAAAGUGGCCUCUUACAUAUUUUAUGGCUUAGGUAAAUGGACUUAAUUUGCUAUAAUUUGAGUGAGCUCCUCACU
.----.((((.....)))).(((((...(((((.((..(((((((((((((......))))))...)))))))..)).)))))....))))) ( -21.30)
>consensus
CUGGCCUGCCAAGGUAGCAAAGUGGC_UCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC_
.....................((((...(((((.((..(((((((((((((......))))))...)))))))..)).)))))..))))... (-19.09 = -19.53 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:46 2006