| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,872,323 – 9,872,425 |
| Length | 102 |
| Max. P | 0.905151 |
| Location | 9,872,323 – 9,872,425 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.83 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9872323 102 - 27905053 CAGCAAUUUGUACAAGUCAA-UCCCGUUGGCGCCAAAAGUCUACGGUGCUGCCAAUGGCAAAAGGAAA------------AACCCGAGAGCGAAAGAUGAAAAUCGGCUUAAAA-----A .(((..(((((.(.......-..(((((((((.((...(....)..)).))))))))).....((...------------...))..).))))).(((....))).))).....-----. ( -23.80) >DroVir_CAF1 86518 97 - 1 CAGCAAUUUGUACAAGUCAA-ACUCGUUGGCGCCAAAAGUCUACGGCGCUGGCAUUAGCAAAAG--------------AAAAGCCA--UGCAAGAGAUGAAAAUCCGUUUAAAA------ ..(((.((((.......)))-)...((..(((((..........)))))..))...........--------------........--)))..(.(((....))))........------ ( -20.90) >DroGri_CAF1 80000 111 - 1 CAGCAAUUUGUACAAGUCAA-AUCCAUUGGCGCCAAAAGUCUACGGCGCUGGCAAAGGCAAAAGCAAAAUGCUAAAAGAAAACCAA--CGCAGGAGUUGAAAAUCCGCUUAAAA------ .((((.(((((....(((..-..(((...(((((..........))))))))....)))....))))).)))).............--.((.(((........)))))......------ ( -25.40) >DroWil_CAF1 100534 95 - 1 CAGCAAUUUGUACAAGUCAA-ACUCGUUGGCGCCAAAAGUCUACGG------------CCAAAAGAAA------------AGUCCAAAAACGAAAGAUGAAAAUCGGCUUAAAAAAAAAA .(((..((((.((..(((((-.....)))))(((..........))------------).........------------.)).)))).......(((....))).)))........... ( -14.50) >DroMoj_CAF1 70525 99 - 1 CAGCAAUUUGUACAAGUCAA-AACGAUUGGCGCCAAAAGUCUACGGCGCUAGCAUUAGCAAAAG--------------AAACGCAAAAGGCACGAGAUGAAAAUCCGCUUAAAA------ ..((..(((((.....((..-......(((((((..........)))))))((....))....)--------------)...)))))..)).((.(((....))))).......------ ( -22.70) >DroAna_CAF1 77339 103 - 1 CAGCAAUUUGUUCAAGUCAAAACCCGUUGGCGCCAAAAGUCUACGGUGCUGCCAAUGGCAAAAGGAAA------------AACCCGAA-ACGAAAGAUGAAAAUCGGCUUAAAAA----A .(((..(((((((..........(((((((((.((...(....)..)).))))))))).....((...------------...))).)-))))).(((....))).)))......----. ( -24.20) >consensus CAGCAAUUUGUACAAGUCAA_ACCCGUUGGCGCCAAAAGUCUACGGCGCUGGCAAUGGCAAAAGGAAA____________AACCCAAAAGCAAAAGAUGAAAAUCCGCUUAAAA______ .(((..(((((....(((((......)))))(((..........)))(((......)))..............................))))).(((....))).)))........... (-12.72 = -12.17 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:40 2006