| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,864,599 – 9,864,698 |
| Length | 99 |
| Max. P | 0.551071 |
| Location | 9,864,599 – 9,864,698 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.05 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.551071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9864599 99 - 27905053 UUUCGGUUUUGGUUUUGUUCUUCUAUUUUUUUUUUUUUCUGCUACAAGGAUAAUUUCUCGUGGCGUCAGUCAAGCGCGCUCACCCAUAGACAUAAAUAU .....(((((((............................(((((.((((....)))).)))))((.(((.......))).))))).))))........ ( -14.70) >DroSec_CAF1 68924 83 - 1 UUUCGGUUUUGGUCUUGUUCUU--------------GGUUGCUACAAGGAUAAUUCCUCGUGGCGUCAGUCAAGC--GCUCACCCAUAGACAUAAAUAU .....(((((((....((.(((--------------((.((((((.((((....)))).))))))....))))).--))....))).))))........ ( -23.00) >DroSim_CAF1 71584 83 - 1 UUUCGGUUUUGGUCUUGUUCUU--------------GGCUGCUACAAGGAUAAUUCCUCGUGGCGUCAGUCAAGC--GCUCACCCAUAGACAUAAAUAU .....(((((((....((.(((--------------(((((((((.((((....)))).)))))...))))))).--))....))).))))........ ( -26.50) >consensus UUUCGGUUUUGGUCUUGUUCUU______________GGCUGCUACAAGGAUAAUUCCUCGUGGCGUCAGUCAAGC__GCUCACCCAUAGACAUAAAUAU .....(((((((............................(((((.((((....)))).)))))((.(((.......))).))))).))))........ (-16.79 = -16.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:35 2006