| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,407,827 – 1,407,927 |
| Length | 100 |
| Max. P | 0.984904 |
| Location | 1,407,827 – 1,407,927 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -19.91 |
| Energy contribution | -21.38 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.984904 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1407827 100 - 27905053 UGGCGUCCAUGGCAUCCAAUAGCAACAUUUGCAGUGCUGUGGGA----GCAGU--------AAAGAAGACGAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCAGUGGCUAU ((((.((((..((.(((.((((((.(.......))))))).)))----))...--------............((....)).........)))).))))((((...)))).. ( -31.80) >DroSec_CAF1 8617 100 - 1 UGGCGUCAAUGGCCUCCAAUAGCAACAUUUGCAGUGCUGUGGGA----GCAGU--------AAAGAAGACAAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCGGUGGCUAU .(((.....(((((((((((.(((.....)))..((((((....----)))))--------)...........((....)).......))))))))))).)))......... ( -35.20) >DroSim_CAF1 8282 100 - 1 UGGCGUCAAUGGCCUCCAAUAGCAACAUUUGCAGUGCUGUGGGA----GCAGU--------AAAGAAGACGAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCGGUGGCUAU .(((.....(((((((((((.(((.....)))..((((((....----)))))--------)...........((....)).......))))))))))).)))......... ( -35.20) >DroEre_CAF1 12138 94 - 1 ------CCAUAUCCUCCAAUAGCAACGUAGUCAGUGCUGUGGGU----GCAAU--------AAAGAAAACGAAGCGCAAGCGUAAAAAGUUGGAGGCCAAGCCUGUGGCUAU ------......((((((((.(((.((((((....))))))..)----))...--------............((....)).......))))))))...((((...)))).. ( -26.70) >DroYak_CAF1 7909 94 - 1 ------CCAUAGCCUCCAAUAGCAAAAUUGGCAGUGCUGUGGGA----GCCAU--------AAAAAAGACGAAGCGUAAACGUAAAAAAUUGGAGGCUAAGCCAGUUGCUAU ------((((((((((((((......))))).)).))))))).(----((...--------............(((....)))....((((((........))))))))).. ( -25.80) >DroAna_CAF1 6985 102 - 1 UC-------UGG---CCAAUAGCAGUUCUGGCGCUGGAAUGGGUGGCAGCAAGAAGGGCAGAAAGGACAAGACGCGCAAGCGCAAAAAACUGGAGGCCAAACCCGUGGCCAU ..-------(((---((..((((.((....))))))..(((((((((.((.......))...........(.(((....))))............)))..))))))))))). ( -32.90) >consensus UG____CCAUGGCCUCCAAUAGCAACAUUGGCAGUGCUGUGGGA____GCAAU________AAAGAAGACGAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCAGUGGCUAU .........(((((((((((((((..........)))))).................................((....)).........)))))))))(((.....))).. (-19.91 = -21.38 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:28 2006