| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,855,540 – 9,855,641 |
| Length | 101 |
| Max. P | 0.569087 |
| Location | 9,855,540 – 9,855,641 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -7.98 |
| Energy contribution | -8.18 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9855540 101 - 27905053 GUGAAUUGGUUGUUCAAAAAAUAA-G-----UUUAGUAUUUGUAAAACUCAAAUAAUUAGCUACAUUAUUGCAACGCAAUUGAUAUUUGCUAAUCUAAUC---------GCUUCAA ((((....(((((..........(-(-----((...((((((.......))))))...))))........)))))((((.......))))........))---------))..... ( -16.67) >DroSec_CAF1 59905 106 - 1 GUGAAUAGGUUGUACAAAUAAUAA-GUGUAAUUUAGUAUUUGUAAAAGUCAAAUAAUAAGCUACAUCUUUGUAACGCAAUUGACAUUUGCUAAUCUAAUC---------GCCACAA ((((.(((((((((((((......-(((((.((((.((((((.......)))))).)))).))))).))))))..((((.......))))))))))).))---------))..... ( -22.40) >DroSim_CAF1 62604 106 - 1 GUGAAUAGGUUGUACAAAUAACAA-GUGUAGUUUAGUAUUUGUAAAAGUCAAAUAAUAAGCUGCAUCUUUGUAACGCAAUUGACAUUUGCUAAUCUAAUC---------GCCACAA ((((.(((((((........((((-((((((((((.((((((.......)))))).))))))))))..))))...((((.......))))))))))).))---------))..... ( -28.80) >DroEre_CAF1 60282 113 - 1 GUGAAUAGGUUGUCCAAAUAAAAACGUGUACUUUGGUAUUUGUCAAAGUUAAACA---AGCUGCAUCUUUGUAAUGCAAUUGACAUUUGCUAAUCUAAUCAUGUACGACGCCACAA (((....((....))........(((((....((((((..((((((((((.....---))))((((.......))))..))))))..))))))......))))).......))).. ( -24.50) >DroYak_CAF1 61054 97 - 1 GUGAAUAGAUUGCUCAAAUAAUAGCCGGUACUUUAGUAUUUGUGAAAGUUAAAUA---UGUUGAUUCUUUGUAAUGCAAUUAACAU-UGCUAAUCUAAUCA--------------- .(((.((((((((.....((((.((..((((....))))..))....))))...(---(((((((((........).)))))))))-.)).)))))).)))--------------- ( -17.80) >consensus GUGAAUAGGUUGUACAAAUAAUAA_GUGUACUUUAGUAUUUGUAAAAGUCAAAUAAU_AGCUGCAUCUUUGUAACGCAAUUGACAUUUGCUAAUCUAAUC_________GCCACAA ..((.(((((((........................((((((.......))))))....................((((.......))))))))))).))................ ( -7.98 = -8.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:31 2006