Locus 3642

Sequence ID 3R_DroMel_CAF1
Location 9,835,183 – 9,835,285
Length 102
Max. P 0.999696
window5855

overview

Window 5

Location 9,835,183 – 9,835,285
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 95.46
Mean single sequence MFE -23.82
Consensus MFE -21.94
Energy contribution -21.94
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.92
SVM decision value 3.90
SVM RNA-class probability 0.999696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9835183 102 - 27905053
CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA
((((((((.((((((....)))))).....(((.(((((...)))))...)))............))))))))............................. ( -24.50)
>DroSec_CAF1 41060 102 - 1
CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA
((((((((.((((((....)))))).....(((.(((((...)))))...)))............))))))))............................. ( -24.50)
>DroSim_CAF1 42915 102 - 1
CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA
((((((((.((((((....)))))).....(((.(((((...)))))...)))............))))))))............................. ( -24.50)
>DroEre_CAF1 42346 95 - 1
CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCACAACUGAA-------AACAGAAAACCCAAAACCCAAUCCCA
.(((((((.((((((....)))))).....(((.(((((...)))))...)))............))))-------)))....................... ( -22.80)
>DroYak_CAF1 42706 95 - 1
CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAA-------AACAGAAAACCCAAAACCCAAUCCCA
.(((((((.((((((....)))))).....(((.(((((...)))))...)))............))))-------)))....................... ( -22.80)
>consensus
CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA
.((((((...(.(((...(((((......)))))(((((...)))))...))).)...(((....)))............))))))................ (-21.94 = -21.94 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:22 2006