| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,834,065 – 9,834,193 |
| Length | 128 |
| Max. P | 0.997042 |
| Location | 9,834,065 – 9,834,160 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 93.70 |
| Mean single sequence MFE | -15.46 |
| Consensus MFE | -12.78 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.83 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.986219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9834065 95 + 27905053 AACGACAAAUAAUCGUGGAAAAUGCAAAUUUUUUUAGGCAAAAGCGCAACAGAAAAAAAAAAGUUGAAUGCAAAGAAGUCUGGAA-AACGAACGCA .((((.......))))......(((....((((((((((....((.((((............))))...))......))))))))-)).....))) ( -13.30) >DroSec_CAF1 39941 95 + 1 AACGACAAAUAAUUGUGGAAAAUGCAAAUUUUUUUAGGCAAAAGCGCAACACACAA-AAAAUGUUGAAUGCAAAGAAGUCUGGAAAAACGAACGCA ..(.((((....)))).)....(((...(((((((((((....((.(((((.....-....)))))...))......))))))))))).....))) ( -15.60) >DroSim_CAF1 41798 95 + 1 AACGACAAAUAAUUGUGGAAAAUGCAAAUUUUUUUAGGCAAAAGCGCAACACAAAA-AAAAUGUUGAAUGCAAAGAAGUCUGGAAAAACGAACGCA ..(.((((....)))).)....(((...(((((((((((....((.(((((.....-....)))))...))......))))))))))).....))) ( -15.60) >DroEre_CAF1 41195 92 + 1 AACGACAAAUAAUUGUAGAAAAUGCAAAUUU-UUAAGGCAAAAGCGUAACACAAA--AAAAUGUUGAAUGCAAAGAAGCCUGGAA-AACGAACGCA ..((........(((((.....))))).(((-((.((((....((((((((....--....))))..))))......)))).)))-))))...... ( -13.60) >DroYak_CAF1 41538 94 + 1 AACGACAAAUAAUUGUAGAAAAUGCAAAUUUUUUUAGGCAAAAGCGCAGCACAAA--AAAAUGUUGAAUGCAAAGAAGCCUGGAAAAACGAACGCA ..((........(((((.....))))).(((((((((((....((.(((((....--....)))))...))......)))))))))))))...... ( -19.20) >consensus AACGACAAAUAAUUGUGGAAAAUGCAAAUUUUUUUAGGCAAAAGCGCAACACAAAA_AAAAUGUUGAAUGCAAAGAAGUCUGGAAAAACGAACGCA ..((........(((((.....))))).(((((((((((....((.(((((..........)))))...))......)))))))))))))...... (-12.78 = -13.18 + 0.40)
| Location | 9,834,094 – 9,834,193 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 93.55 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -17.54 |
| Energy contribution | -17.98 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.79 |
| SVM RNA-class probability | 0.997042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9834094 99 + 27905053 UUUUUUAGGCAAAAGCGCAACAGAAAAAAAAAAGUUGAAUGCAAAGAAGUCUGGAA-AACGAACGCAAUAUAUUGCGUGAGUCAGAAGAAGUUCAGUGAA .(((((((((....((.((((............))))...))......))))))))-)((..((((((....))))))..)).................. ( -17.30) >DroSec_CAF1 39970 97 + 1 UUUUUUAGGCAAAAGCGCAACACACAA-AAAAUGUUGAAUGCAAAGAAGUCUGGAAAAACGAACGCAAU--AUUGCGUGAGUCAGAAGAAGUUCAGUGAA ((((((((((....((.(((((.....-....)))))...))......))))))))))..((((.....--...((....))........))))...... ( -18.19) >DroSim_CAF1 41827 99 + 1 UUUUUUAGGCAAAAGCGCAACACAAAA-AAAAUGUUGAAUGCAAAGAAGUCUGGAAAAACGAACGCAAUAUAUUGCGUGAGUCAGAAGAAGUUCAGUGAA ((((((((((....((.(((((.....-....)))))...))......))))))))))((..((((((....))))))..)).................. ( -19.00) >DroEre_CAF1 41224 96 + 1 UU-UUAAGGCAAAAGCGUAACACAAA--AAAAUGUUGAAUGCAAAGAAGCCUGGAA-AACGAACGCAAUAUAUUGCGUGAGUCAGAAUAAGUUCAGUGAA ((-((.((((....((((((((....--....))))..))))......)))).)))-)((..((((((....))))))..))..(((....)))...... ( -17.10) >DroYak_CAF1 41567 98 + 1 UUUUUUAGGCAAAAGCGCAGCACAAA--AAAAUGUUGAAUGCAAAGAAGCCUGGAAAAACGAACGCAAUAUAUUGCGUGAGUCAGAAUAAGUUCAGUGAA ((((((((((....((.(((((....--....)))))...))......))))))))))((..((((((....))))))..))..(((....)))...... ( -22.70) >consensus UUUUUUAGGCAAAAGCGCAACACAAAA_AAAAUGUUGAAUGCAAAGAAGUCUGGAAAAACGAACGCAAUAUAUUGCGUGAGUCAGAAGAAGUUCAGUGAA ((((((((((....((.(((((..........)))))...))......))))))))))((..((((((....))))))..)).................. (-17.54 = -17.98 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:19 2006