Locus 364

Sequence ID 3R_DroMel_CAF1
Location 1,400,795 – 1,400,885
Length 90
Max. P 0.989162
window607

overview

Window 7

Location 1,400,795 – 1,400,885
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 84.62
Mean single sequence MFE -13.39
Consensus MFE -13.47
Energy contribution -14.02
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.44
Structure conservation index 1.01
SVM decision value 2.15
SVM RNA-class probability 0.989162
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1400795 90 + 27905053
UCUCUAUCUAGCUUUGUUACUCAUUUAUGCUAGCUAAACAUACAUAUAGCUCUAUACCAUAUAAAAUAUCAAGAUUAAAGCUCUUGCUAC
..(((...((((..((.....)).....))))((((..........)))).....................)))....(((....))).. (  -7.20)
>DroSec_CAF1 1627 80 + 1
G--CUAGCUAGCUUUGUUACCUGUUUAUGCUAGUUAAACAGACAUA--------UACCAUAUUAAAUAGCAAGAUUAAAGCUCUUGCUAC
.--.((((((((................))))))))..........--------............((((((((.......)))))))). ( -17.69)
>DroSim_CAF1 875 80 + 1
G--CUAGCUAGCUUUGUUACCUGUUUAUGCUAGUUAAACAGACAUA--------UACCAUAUUAAAUAGCAAGAUUAAAGCUCUUGUUAC
.--.((((((((................))))))))..........--------............((((((((.......)))))))). ( -15.29)
>consensus
G__CUAGCUAGCUUUGUUACCUGUUUAUGCUAGUUAAACAGACAUA________UACCAUAUUAAAUAGCAAGAUUAAAGCUCUUGCUAC
....((((((((................))))))))..............................((((((((.......)))))))). (-13.47 = -14.02 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006