Locus 3639

Sequence ID 3R_DroMel_CAF1
Location 9,833,473 – 9,833,565
Length 92
Max. P 0.767783
window5850

overview

Window 0

Location 9,833,473 – 9,833,565
Length 92
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.59
Mean single sequence MFE -24.62
Consensus MFE -18.66
Energy contribution -18.66
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.76
SVM decision value 0.52
SVM RNA-class probability 0.767783
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9833473 92 + 27905053
AUAUA-AAAA-GAGUGAAUUUUGUAGAGUGCAUUAAGGCAUUCGCUUCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGCG
.((((-(((.-.......)))))))((((((......))))))....(((((...(((((.(((((((....))))))).)))))....))))) ( -26.50)
>DroSec_CAF1 39252 92 + 1
AUAUA-AUAA-GAGAGAAAUUCGUACAGUGUAUUAAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG
.....-....-.........(((((((((((......)))))....(((.(((((...((((....)))).))))))))))))))......... ( -17.80)
>DroSim_CAF1 41115 92 + 1
AUAUA-AAAG-GAGCGAAUUUUGUACAGUGUAUUAAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG
.....-...(-((((((((...((((...))))......))))))))).(((...(((((.(((((((....))))))).)))))....))).. ( -27.10)
>DroEre_CAF1 40577 94 + 1
AUAUAGAGAGAGAGAGAAGUUUGAACAGUGUAUUCAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG
...........(((.((((((((((.......))))))).))).)))(.(((...(((((.(((((((....))))))).)))))....))).) ( -23.50)
>DroYak_CAF1 40882 92 + 1
AUGUA-AGAG-GAGCGAAAUUUGAGCAGUGUAUUCAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG
.....-...(-(((((((.((((((.......))))))..)))))))).(((...(((((.(((((((....))))))).)))))....))).. ( -28.20)
>consensus
AUAUA_AAAG_GAGAGAAAUUUGUACAGUGUAUUAAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG
...........((((((..........((((......))))))))))(.(((...(((((.(((((((....))))))).)))))....))).) (-18.66 = -18.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:17 2006