Locus 3638

Sequence ID 3R_DroMel_CAF1
Location 9,825,897 – 9,825,994
Length 97
Max. P 0.877542
window5849

overview

Window 9

Location 9,825,897 – 9,825,994
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -29.12
Consensus MFE -25.14
Energy contribution -25.02
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.51
Structure conservation index 0.86
SVM decision value 0.90
SVM RNA-class probability 0.877542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9825897 97 + 27905053
UACACCGACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCAAAGGGGAUUUGCAAGGUAAUGGCA--AGAGCUUUUCCGACAC
.....((..(((((....((((....))))..((((.((((...(((.((..((((....))))..)))))..)))).)))--)..)))))..)).... ( -27.90)
>DroSec_CAF1 31950 97 + 1
UACACCAACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAUUGGCA--AGAGCUUUUCCGACAC
.....((((((.(((...((((....))))...)))..))))))(((.((..((((....))))..)))))((....(((.--...)))...))..... ( -30.10)
>DroSim_CAF1 33758 99 + 1
UACACCAACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCAAAAGAGCUUUUCCGACAC
.....((((((.(((...((((....))))...)))..))))))(((.((..((((....))))..)))))((....(((......)))...))..... ( -30.30)
>DroEre_CAF1 33174 91 + 1
UAC------CAAGUAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCA--AGAGCUUUUCCGACAC
...------.........((((....))))...(((((..(((.((((((((((((....))))..........)))))))--).)))....)).))). ( -26.60)
>DroYak_CAF1 33547 91 + 1
UAC------CAAGCAUCCGCACAUGUGUGCAAUUGUGGUGGCUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCA--AGAGCUUUUCCGACAC
...------...(((...((((....))))...)))((.((((.((((((((((((....))))..........)))))))--).))))...))..... ( -30.70)
>consensus
UACACC_ACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCA__AGAGCUUUUCCGACAC
...........((((.(((((..((....))..))))).)))).(((.((..((((....))))..)))))((....(((......)))...))..... (-25.14 = -25.02 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:16 2006