Locus 3636

Sequence ID 3R_DroMel_CAF1
Location 9,814,117 – 9,814,219
Length 102
Max. P 0.568173
window5847

overview

Window 7

Location 9,814,117 – 9,814,219
Length 102
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 89.29
Mean single sequence MFE -25.25
Consensus MFE -17.00
Energy contribution -18.64
Covariance contribution 1.64
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 0.67
SVM decision value 0.07
SVM RNA-class probability 0.568173
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9814117 102 - 27905053
UUUCCUACCCCUUCCCAUUGGAC-----GCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCU-UUGGUGGGUUACGAAAAAA---UAAAAGAGAAACAAACGCAAAUACAAA
...((((((.......(((((..-----.))))).(((((((((((......)))))))))-))))))))...........---........................... ( -26.50)
>DroSec_CAF1 20396 102 - 1
UUUCCUACCCCUUCCCAUUAGUC-----GCCCAUAAAAGCCGGGCCGAAAUGGGUUUGGCUUUUGGUGGGUUACGAAAAA----AAAAAGAGAAACAAACGCAAAUACAAA
....................((.-----((((((((((((((((((......)))))))))))).)))))).))......----........................... ( -28.10)
>DroSim_CAF1 21004 106 - 1
UUUCCUACCCCUUCCCAUUAGCC-----GCCCAUAAAAGCCGGGUCGAAAUGGGUUUGGCUUUUGGUGGGUUACGAAAAAAAAAAAAAAGAGAAACAAACGCAAAUACAAA
((((.((.(((...(((..((((-----((((((...............))))))..))))..))).))).)).))))................................. ( -24.16)
>DroEre_CAF1 21407 95 - 1
UUUCCUACCACUUCCCAUUCGAC-----GCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCUU----UGGGUUACGAAAA-------AAAGAGAAACAAACGCAAAUACAAA
..........(((....((((..-----(((....(((((((((((......))))))))))----).)))..))))..-------...)))................... ( -22.70)
>DroYak_CAF1 21576 103 - 1
UUUCCUACCCCUUCCCAUUAGACUUUAGUCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCUU----UGGGUUACGAAAAA----AAAAAGAGAAACAAACGCAAAUACAAA
((((..((((......(((.(((....))).))).(((((((((((......))))))))))----)))))...))))..----........................... ( -24.80)
>consensus
UUUCCUACCCCUUCCCAUUAGAC_____GCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCUUUUGGUGGGUUACGAAAAA____AAAAAGAGAAACAAACGCAAAUACAAA
.............................(((.(((((((((((((......))))))))))))).))).......................................... (-17.00 = -18.64 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:14 2006