Locus 3634

Sequence ID 3R_DroMel_CAF1
Location 9,810,265 – 9,810,373
Length 108
Max. P 0.656203
window5844

overview

Window 4

Location 9,810,265 – 9,810,373
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 78.98
Mean single sequence MFE -25.35
Consensus MFE -19.50
Energy contribution -20.70
Covariance contribution 1.20
Combinations/Pair 1.10
Mean z-score -1.41
Structure conservation index 0.77
SVM decision value 0.26
SVM RNA-class probability 0.656203
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9810265 108 + 27905053
AAUGACACAUUAUAAACACCUAAAAUAACUUUUUGUCAGUGCAUCCUGUCUGUUUUUCCCACAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA
..(((((..........................)))))((((.((((((..(.....)..))))))...(((((....((.....))..))))))))).......... ( -21.57)
>DroSec_CAF1 16624 89 + 1
-------------------CUUAAUUAACUUUUUCUCAGUGCAUCCUGUCUGUUGUUCCCGCAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUUGCCGGGA
-------------------...................((((.(((((((..(((((((....)))))))..))))..)))..(((.....))))))).......... ( -24.90)
>DroSim_CAF1 17179 89 + 1
-------------------CUUAAAUAACUUUUUCUCAGUGCACCCUGUCUGUUGUUCCCGCAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA
-------------------...................((((.((.((((..(((((((....)))))))..))))..))...(((.....))))))).......... ( -23.80)
>DroEre_CAF1 17657 108 + 1
AAGGACACAUUAUAAACAACUGAAAGAACUUUUUGUCAGUGCAUCCUGUCUGCUGUUCCCACAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGAA
.(((((............(((((.(((....))).)))))...(((((((.((((((((....)))))))).))))..)))..))))).(((.((.....)).))).. ( -33.00)
>DroYak_CAF1 17667 100 + 1
AAGGACACGUUAUAAACAACUAGAAUAGCUUUUUGUCAGUGUAUCCUGUCAUC--------CGGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA
.(((((..(((((...........)))))....(((((((((.(((((.....--------)))))))).)))))).......))))).(((.((.....)).))).. ( -23.50)
>consensus
AA_GACAC_UUAUAAACA_CUAAAAUAACUUUUUGUCAGUGCAUCCUGUCUGUUGUUCCCACAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA
......................................((((.(((((((..(((((((....)))))))..))))..)))..(((.....))))))).......... (-19.50 = -20.70 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:12 2006