| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,809,265 – 9,809,370 |
| Length | 105 |
| Max. P | 0.554891 |
| Location | 9,809,265 – 9,809,370 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.30 |
| Mean single sequence MFE | -28.95 |
| Consensus MFE | -21.06 |
| Energy contribution | -20.58 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9809265 105 + 27905053 GUGUGAGGUCGAUGAGCACAUAUGG--------GGGAAAACUAUGGGUGCAGGGGGUCGAUAAGGAGGUACCCUAAAUUAUAAUCAAUUGCAUUGCCAAGUUGAACAGACAUA------ ......((.(((((.((((.(((((--------.......))))).))))((((..((........))..))))................)))))))..(((.....)))...------ ( -26.00) >DroSec_CAF1 15900 104 + 1 GUGUGAGGUCGAUGAGCACAUAUGG---------GGAAAACUAUGGGUGCAGGGAGUCGAUAAGGAGGUACCCUAAAUUAUACUCAAUUGCAUUGCCAAGUUGAAAAUACAUA------ (((((...(((((..((((.(((((---------......))))).)))).((.(((((((...(((...............))).)))).))).))..)))))...))))).------ ( -25.96) >DroSim_CAF1 16267 104 + 1 GUGUGAGGUCGAUGAGCACAUAUGG---------GGAAAACUAUGGGUGCAGGGAGUCGAUAAGCAGGUACCCUAAAUUAUACUCAAUUGCAUUGCCAAGUUAAAAAUACAUA------ ......((.(((((.((((.(((((---------......))))).))))((((..((........))..))))................)))))))................------ ( -24.70) >DroEre_CAF1 16464 115 + 1 GUGUGAGGUCGAUGAGCACAUAUGGAAACGAGUGGGAAAGCUGUGGGUGCAGGGGGUCGAUAGGGAGGUACCCUAAAUAA-ACCCAAUUGCAUUGCUACGUUGAACAUAUA---GUACA (((((...(((((((((((((.((....)).))).....((..(((((..((((..((........))..))))......-)))))...))..)))).)))))).))))).---..... ( -36.00) >DroYak_CAF1 16520 119 + 1 GUGUGAGGUCGAUGAGCACAUAUGGGAACGAGUGGGACAGCUGUGGGUGCAGGGGGUCGAUUGGGAGGUACCCUAAAUAAUACUCAAUUGCAUUGCUGAGUUGAUCAUAUAUAUAUAUA (((((.(((((((.((((...(((.((..(((((.(((..((((....))))...)))..(((((......)))))....)))))..)).)))))))..))))))).)))))....... ( -32.10) >consensus GUGUGAGGUCGAUGAGCACAUAUGG________GGGAAAACUAUGGGUGCAGGGGGUCGAUAAGGAGGUACCCUAAAUUAUACUCAAUUGCAUUGCCAAGUUGAACAUACAUA______ ......((.(((((.((((.(((((...............))))).))))((((..((........))..))))................)))))))...................... (-21.06 = -20.58 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:10 2006