Locus 3632

Sequence ID 3R_DroMel_CAF1
Location 9,808,732 – 9,808,827
Length 95
Max. P 0.999888
window5842

overview

Window 2

Location 9,808,732 – 9,808,827
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 98.31
Mean single sequence MFE -23.18
Consensus MFE -23.10
Energy contribution -22.86
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.76
Structure conservation index 1.00
SVM decision value 4.39
SVM RNA-class probability 0.999888
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9808732 95 - 27905053
AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUUUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU
...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. ( -22.70)
>DroSec_CAF1 15377 95 - 1
AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU
...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. ( -22.70)
>DroSim_CAF1 15747 95 - 1
AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU
...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. ( -22.70)
>DroEre_CAF1 15924 94 - 1
AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAA-AAGUUGAGCAAUUUUUUACACAAGCCAGGAGGAAUCCGU
...(((.(((((((.((((....)))))))...(((((((((....(((......-..)))....))))))))))))).))).(((....))).. ( -23.90)
>DroYak_CAF1 15984 94 - 1
AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAA-AAGUUGAGCAAUUUUUUACACAAGCCAGGAGGAAUCCGU
...(((.(((((((.((((....)))))))...(((((((((....(((......-..)))....))))))))))))).))).(((....))).. ( -23.90)
>consensus
AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU
...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. (-23.10 = -22.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:09 2006