| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,799,716 – 9,799,813 |
| Length | 97 |
| Max. P | 0.806620 |
| Location | 9,799,716 – 9,799,813 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.65 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -22.22 |
| Energy contribution | -24.53 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9799716 97 + 27905053 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUU----------UCUUUUGGUUUUUUUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((..(((((((((((((.....))----------)))))))))))...........)))))))))).). ( -27.82) >DroSec_CAF1 8642 93 + 1 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUU----------UCUUUUGGU----UUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((..(((((((((((((.....))----------)))))))))----)).......)))))))))).). ( -28.70) >DroSim_CAF1 9060 103 + 1 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUUUCUUUGCUUUUCUUUUGGU----UUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((..((((((((((((((.((........))))))))))))))----)).......)))))))))).). ( -33.00) >DroYak_CAF1 9014 102 + 1 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUUUCUUUGCUUUUCUUUUGGU-----UUUUACAUAAAUGCGGCGCCG ..(..(((((.....)))))..)....(.(((((((((....((((((((((((((.((........))))))))))))))-----))..))).....)))))).). ( -32.60) >consensus GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUU__________UCUUUUGGU____UUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((....((((((((((((.((........)))))))))))))).............)))))))))).). (-22.22 = -24.53 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:08 2006