| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,796,970 – 9,797,080 |
| Length | 110 |
| Max. P | 0.544280 |
| Location | 9,796,970 – 9,797,080 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -21.81 |
| Energy contribution | -22.32 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9796970 110 + 27905053 AAUGCGAAGUGGGGGUCACCUUGGCUCUUGUAUGAGAUCCAUGAUGCUGCGCUCGAACUCAACUUUGACGAAAUUACUGUCGGAAUUCGAGUUCCUGGCCAAAAGAUUGA ...((((.(((((.((((...(((.((((....)))).))))))).)).)))))((((((((.(((((((.......))))))).)).))))))...))........... ( -28.00) >DroVir_CAF1 6307 101 + 1 ---G------GAUGAACACCUUGGCUCAUGCAGUAGAUCCAUGAUGCUGCGCUCGAACUCAAUCUUGACAAAGUUGCUGUUGGAACUCGAAUGCCGGGCCAGGAGAUUGA ---.------.........((((((((..((((((.........))))))((((((..(((((..((((...))))..)))))...))))..)).))))))))....... ( -27.30) >DroEre_CAF1 6233 104 + 1 AAUG------GGGGGUCACCUUGGCUCUUGUAUGAGAUCCAUGAUGCUGCGCCCGAAUUCAACUUUGACGAAUUUACUGUCGGAAUUCGGGUGUCUGGCCAAAAAAUUGA ..((------(((.((((...(((.((((....)))).))))))).))((((((((((((.....(((((.......)))))))))))))))))....)))......... ( -33.90) >DroWil_CAF1 8150 110 + 1 AAUUUUUAGUCUUAAGCACCUUGGCUCUUGUAUUAGAUCCAUAAUGCUGCGUUCGAAUUCAACUUUCACGAAAUUGCUAUCGGAAUUCGAAUGCCUGGCCAAUAGAUUCA ........(((...((((...(((.(((......))).)))...))))((((((((((((......((......))......))))))))))))..)))........... ( -26.90) >DroYak_CAF1 6159 104 + 1 AAUG------GGGGGUCACCUUGGCUCUUGUAUGAGAUCCAUGAUGCUGCGCUCGAAUUCAACUUUGACGAAAUUACUGUCGGAAUUCGAGUGCCUGGCCAAAAGAUUGA ..((------(((.((((...(((.((((....)))).))))))).))((((((((((((.....(((((.......)))))))))))))))))....)))......... ( -33.70) >DroPer_CAF1 7029 102 + 1 --UG------UGGUUUCACCUUGGCUCUUGUAUUAGAUCCAUGAUACUGCGCUCGAAUUCAACUUUGACAAAAUUUGAGUCAGAAGUCGAGUGCCUCGCGAGUAGAUUGA --.(------..((.(((...(((.(((......))).)))))).))..)(((((.((((.((((((((.........))))).))).))))......)))))....... ( -25.50) >consensus AAUG______GGGGGUCACCUUGGCUCUUGUAUGAGAUCCAUGAUGCUGCGCUCGAAUUCAACUUUGACGAAAUUACUGUCGGAAUUCGAGUGCCUGGCCAAAAGAUUGA ....................((((((...((((.(......).)))).((((((((((((.....(((((.......)))))))))))))))))..))))))........ (-21.81 = -22.32 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:07 2006