Locus 3628

Sequence ID 3R_DroMel_CAF1
Location 9,795,120 – 9,795,240
Length 120
Max. P 0.895696
window5838

overview

Window 8

Location 9,795,120 – 9,795,240
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -31.60
Consensus MFE -30.79
Energy contribution -30.98
Covariance contribution 0.19
Combinations/Pair 1.03
Mean z-score -0.98
Structure conservation index 0.97
SVM decision value 0.99
SVM RNA-class probability 0.895696
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9795120 120 - 27905053
GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUAGAAACAGCAGCCGAAACCCUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUAAAU
((..(((((.(((.((((((((...((.((......)).)).))))).))).....)))....((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -29.20)
>DroVir_CAF1 4127 120 - 1
GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU
((((((((.((((.((((((((...(((((......))))).))))).))).....((((....))))...))))))))((((...((....))..))))............)))).... ( -33.10)
>DroGri_CAF1 4451 120 - 1
GUGAUGUGCGAAGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU
((..(((((.....((((((((...(((((......))))).))))).)))............((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -32.10)
>DroWil_CAF1 5953 120 - 1
GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUUUCUGUAGAAACAGCAGCCGAAACCUUAAUAUUAGCUGAUCUCCAUAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU
((..(((((((((.((((((((...((.((......)).)).))))).)))....))))....((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -31.10)
>DroMoj_CAF1 4423 120 - 1
GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCAUAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU
((..(((((.....((((((((...(((((......))))).))))).)))............((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -32.10)
>DroAna_CAF1 4650 120 - 1
GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACGGCAGCCGAAACUUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUAAAU
((..((((((((..((((((((...(((((......))))).))))).)))....))).....((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -32.00)
>consensus
GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU
((..(((((.....((((((((...(((((......))))).))))).)))............((((.((((((.(.....).)))))).))))..))))).))((......))...... (-30.79 = -30.98 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:05 2006