Locus 3627

Sequence ID 3R_DroMel_CAF1
Location 9,794,637 – 9,794,736
Length 99
Max. P 0.983379
window5837

overview

Window 7

Location 9,794,637 – 9,794,736
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 78.93
Mean single sequence MFE -27.56
Consensus MFE -19.42
Energy contribution -20.12
Covariance contribution 0.70
Combinations/Pair 1.17
Mean z-score -2.37
Structure conservation index 0.70
SVM decision value 1.94
SVM RNA-class probability 0.983379
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9794637 99 - 27905053
ACCAACAAUCGAUUCAA---CAAUCGCAACAGAAAGCAGAACUCCAGUCGAUGCAGUGGCCGCCAUGUGAGAUAUCUGAUGGAUCGAUUGGCGGAGAACCUC
.((..(((((((((((.---(((((...(((....((...(((.((.....)).))).)).....)))..)))...)).)))))))))))..))........ ( -26.40)
>DroSec_CAF1 3844 84 - 1
ACCAACAAUCGAUUCAA---CAAUCGCAACAGAAAGCAGAACUCCAGUCG---------------UGUGAGAAAUCUGAUGGAUCGAUUGGCGGAAAACCUC
.((..(((((((((((.---...((......))...((((.(((((....---------------)).)))...)))).)))))))))))..))........ ( -23.10)
>DroSim_CAF1 3844 84 - 1
ACCAACAAUCGAUUCAA---CAAUCGCAACAGAAAGCAGAACUCCAGUCG---------------UGUGAGAUAUCUGAUGGAUCGAUUGGCGGAAAACCUC
.((..(((((((((((.---...((......))...((((.(((((....---------------)).)))...)))).)))))))))))..))........ ( -23.10)
>DroEre_CAF1 3877 99 - 1
ACCAACAAUCGAUCCAA---CAUUUGCAAUGGAAAGCAGCACUCCAGCCGGUGCAGCAGGCAUGUUGAUGGAUACUUGAUGGAUCGAUUGGCGGCCAACCUU
.((..(((((((((((.---((.......((((.........)))).(((...(((((....))))).))).....)).)))))))))))..))........ ( -31.10)
>DroYak_CAF1 3891 102 - 1
ACCAACAGUCGAUCCAACAACAUUUGCAAUAGAAAGCAGAACUCCAGUCGCUGCAGCAGGCAUGUUGAUGGAUACUUGAUGGAUCGAUUGGCGGAAAACCUC
.((..(((((((((((.(((..(((((........)))))..((((...(((((.....))).))...))))...))).)))))))))))..))........ ( -34.10)
>consensus
ACCAACAAUCGAUUCAA___CAAUCGCAACAGAAAGCAGAACUCCAGUCG_UGCAG__G_C____UGUGAGAUAUCUGAUGGAUCGAUUGGCGGAAAACCUC
.((..(((((((((((.........((........)).......(((......(((((....)))))........))).)))))))))))..))........ (-19.42 = -20.12 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:04 2006