| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,788,154 – 9,788,265 |
| Length | 111 |
| Max. P | 0.681524 |
| Location | 9,788,154 – 9,788,265 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.84 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -22.44 |
| Energy contribution | -23.14 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9788154 111 - 27905053 GCCCAAGGAAAAGUUACGCGCGGCGAAUGCCGCCUUGAAUUCCAAGGGCGAGCAGAUAUGUAUGGCCCGUCUGAUCACUUUCUUGGGUCAGAUUUCAUAUUUAGGCCACAA ((((..((((...(((.(.(((((....)))))).))).))))..))))(.((.((((((..(((((((...((......)).))))))).....))))))...))).... ( -39.80) >DroSec_CAF1 1516 111 - 1 GCCCAAGGAAAAGUUACGCUCGGCAAAUGCCGCCUUGAAUUCUAAGGGCGAGCAGAUAUGCAUGGCCCGCCUGAGCACGUUCCUGGGUCAGAUUUCCAAUUUAGGCCACAA (((.(((((((......(((((((....)))(((((........))))))))).........(((((((...(((....))).)))))))..)))))...)).)))..... ( -36.70) >DroSim_CAF1 1524 111 - 1 GCCCAAGGAAAAGUUACGCUCGGCAAAUGCCGCCUUGAAUUCCAAGGGCGAGCAGAUAUGCAUGGCCCGCCUGAGCACGUUCCUGGGUCAGAUUUCCAAUUUAGGCCACAA (((.(((((((......(((((((....)))(((((........))))))))).........(((((((...(((....))).)))))))..)))))...)).)))..... ( -36.70) >DroEre_CAF1 27148 111 - 1 GCCCAACGAAAAGUUACGAGCGGCAAAUGCCGCGCUGAAUUUCAAGGGCGAGCAGAUUUGUCUGGCCCGACUAAGCACCUUCUUGGGUCAGAUUUCAAAUCUAGGUCACAA ((((...((((..(((.(.(((((....))))).)))).))))..))))((.((((((((((((((((((..(((...))).))))))))))...))))))).).)).... ( -42.90) >DroYak_CAF1 27902 111 - 1 GCCCAAGGAAAAGUUACGCGCGGCAAAUGCCGCCCUGAAUUCAAAGGGCAAGCAAAUUUGUGUGGCCCGACUAAGCUCCUUCUUGGGUCAGAUUUCAGAUUUAGGCCACAA ((((...(((...(((.(.(((((....)))))).))).)))...))))...........(((((((..((((((......)))))(((........))))..))))))). ( -36.60) >DroPer_CAF1 1293 109 - 1 G--CCAGGAAAAGGUGCGGAAGGCCAGUGCCGCCUUGCUGUCCAAAGGAAAGCAGCUAGGCGAAGUGGAGCUGACAACGUUCAUGGGUGAUGUGUCCUAUUUGGGCCACAA (--((..(((....(((((....(((.(..(((((.(((((((...))...))))).))))).).)))..))).))...)))...)))..(((((((.....))).)))). ( -37.10) >consensus GCCCAAGGAAAAGUUACGCGCGGCAAAUGCCGCCUUGAAUUCCAAGGGCGAGCAGAUAUGCAUGGCCCGACUGAGCACGUUCUUGGGUCAGAUUUCAAAUUUAGGCCACAA .....................(((....((((((((........)))))).))(((((((..(((((((..............))))))).....)))))))..))).... (-22.44 = -23.14 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:03 2006