Locus 3624

Sequence ID 3R_DroMel_CAF1
Location 9,777,414 – 9,777,505
Length 91
Max. P 0.869953
window5834

overview

Window 4

Location 9,777,414 – 9,777,505
Length 91
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 79.58
Mean single sequence MFE -19.82
Consensus MFE -13.39
Energy contribution -13.30
Covariance contribution -0.08
Combinations/Pair 1.14
Mean z-score -1.88
Structure conservation index 0.68
SVM decision value 0.87
SVM RNA-class probability 0.869953
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9777414 91 - 27905053
AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCACUCGCAAAGGUGCAGAAUGA---------------------AUAAGUUUU
....((.(((((((........((((.((((.(((....(((......))-----).))).))))...))))....))))))).)).---------------------......... ( -21.20)
>DroSec_CAF1 100629 91 - 1
AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCACUCGCAAAGGCGCAGAAUGA---------------------AUAAGUUUU
....((.(((((((........((((.((((.(((....(((......))-----).))).))))...))))....))))))).)).---------------------......... ( -23.10)
>DroSim_CAF1 101197 91 - 1
AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCACUCGCAAAGGCGCAGAAUGA---------------------AUAAGUUUU
....((.(((((((........((((.((((.(((....(((......))-----).))).))))...))))....))))))).)).---------------------......... ( -23.10)
>DroEre_CAF1 104821 85 - 1
AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCA----CAGAGGCGCAGAAUAA---------------------AUAAGC--U
.......(((((((....((((.....)))).(((....(((......))-----).......))).----.....)))))))....---------------------......--. ( -16.20)
>DroYak_CAF1 104264 106 - 1
AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA-----ACUGCACACGCA----CAGAGGCGCAGAAUAACUAAUAUAUGUACAUAUGUACAUAAGC--U
.(((...(((((((....((((.....)))).(((....(((......))-----).......))).----.....)))))))..........(((((((....))))))).))--) ( -24.90)
>DroAna_CAF1 98384 83 - 1
AAGCCAAUUUGCGCAUAAUACGCUGAACGUGAGCAAAAACCUAAAACAGAAUUCAACUGCACACACA---ACACACUCGCAGAAUA-------------------------------
.......(((((((.......)).....(((.(((......................))).)))...---........)))))...------------------------------- ( -10.45)
>consensus
AAGCCAAUUUGCGCAUAAUACGGCGAACGUGAGCGAAAAUUCAAAACAGA_____ACUGCACACGCA___GCAAAGGCGCAGAAUAA_____________________AUAAGU__U
.......(((((((........(((..(....).............(((.......)))....)))..........))))))).................................. (-13.39 = -13.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:01 2006