Locus 3622

Sequence ID 3R_DroMel_CAF1
Location 9,775,547 – 9,775,637
Length 90
Max. P 0.524889
window5831

overview

Window 1

Location 9,775,547 – 9,775,637
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 82.48
Mean single sequence MFE -34.57
Consensus MFE -21.19
Energy contribution -21.25
Covariance contribution 0.06
Combinations/Pair 1.20
Mean z-score -1.92
Structure conservation index 0.61
SVM decision value -0.02
SVM RNA-class probability 0.524889
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9775547 90 + 27905053
ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGGUGGUGACCUGACCAUGCUGAUGGUGCAGCAUUUAAUGCG
.(((((((((((.......)))))))))))(((((.((.(((((((.(.((.(....))).).)).))).)).))))))).......... ( -35.80)
>DroSec_CAF1 98746 87 + 1
ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGG---UGACCUGCCCAUGCUGAUGGUGCAGCAUUUAAUGCG
.(((((((((((.......)))))))))))(((((.((.(((((..(((((---(.....))))))))).)).))))))).......... ( -38.80)
>DroSim_CAF1 99339 87 + 1
ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGG---UGACCUGCCCAUGCUGAUGGUGCAGCAUUUAAUGCG
.(((((((((((.......)))))))))))(((((.((.(((((..(((((---(.....))))))))).)).))))))).......... ( -38.80)
>DroEre_CAF1 102346 80 + 1
ACACCACUGGGGAGACUCAUCCCUGGGGUGGCUGCCUUGAU-------GGG---UGAGCUCCCCAUGCUGAUGGUGCAGCAUUUAAUGCG
.(((((((((((((.(((((((..(((((....)))))...-------)))---)))))))))))....).)))))..((((...)))). ( -36.60)
>DroYak_CAF1 101955 80 + 1
ACACCACUGGGGAGACUCAUCCCUGGGGUGGCUGCCUUGAU-------GGG---UGAGCUCCCUAUGCUGAUGGUGCAGCAUUUAAUGCG
.(((((((((((((.(((((((..(((((....)))))...-------)))---)))))))))))....).)))))..((((...)))). ( -34.30)
>DroAna_CAF1 96250 75 + 1
CUGCCCCUGGGGAGACUCAUCCUGGUGGUGGCCGGCAUGUUGGAUUUUGG---------------UGCUGAUGGUGCAGCAUUUAAUGCG
(.((((((.((((......)))).).)).))).)((((..........((---------------(((((......)))))))..)))). ( -23.10)
>consensus
ACGCCUCUGGGGAGACUCAUCCCGGGGGUGGCUGCCAUGAUGGCUGAUGGG___UGACCUGCCCAUGCUGAUGGUGCAGCAUUUAAUGCG
.((((.((.((((......)))).))))))((................((............))((((((......)))))).....)). (-21.19 = -21.25 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:58 2006