| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,766,926 – 9,767,016 |
| Length | 90 |
| Max. P | 0.922380 |
| Location | 9,766,926 – 9,767,016 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.80 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -17.48 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9766926 90 - 27905053 CU--------------------G--CCUGCG-----ACCGUUUCUCGGAAAUAAUUAUGCUACUUUUGUGCAAGAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGC ..--------------------.--...(((-----((((.....)))((((..((((((....(((((((((((((......)))))))))))))..))))))..))))...)))) ( -23.60) >DroVir_CAF1 77672 92 - 1 UU--------------------GGGGUUUCG-----UGCUGUUCUCGGAAAUAAUUAUGCUGCUUUUGCGCAAAAGUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGG ((--------------------((((.....-----......))))))((((..((((((....((((..(((((((......)))))))..))))..))))))..))))....... ( -16.50) >DroPse_CAF1 88195 92 - 1 CA--------------------GGCCCUGGG-----UCCGGUUCUCGGAAAUAAUUAUGCUACUUUUGUGCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGC ..--------------------.....((..-----((((.....))))..)).((((((....(((((((((((((......)))))))))))))..))))))............. ( -23.20) >DroWil_CAF1 77070 112 - 1 CUCGCAACCUGAACCUAAACCUGAACCUGGG-----GACCUUUCUUGGAAAUAAUUAUGCUACUUUUGUGCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGC ...((((((.(((......(((......)))-----.....)))..))((((..((((((....(((((((((((((......)))))))))))))..))))))..))))...)))) ( -25.90) >DroMoj_CAF1 86328 97 - 1 UU--------------------AUUUUUUUGGCAGAGCCUGUUCUCGGAAAUAAUUAUGCUGCUUUUGCGCAAAAGUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGG ((--------------------((((((..(((((...)))))...))))))))((((((....((((..(((((((......)))))))..))))..))))))............. ( -19.40) >DroPer_CAF1 88434 92 - 1 CA--------------------GGCCCUGGG-----UCCGGUUCUCGGAAAUAAUUAUGCUACUUUUGUGCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGC ..--------------------.....((..-----((((.....))))..)).((((((....(((((((((((((......)))))))))))))..))))))............. ( -23.20) >consensus CU____________________GGCCCUGGG_____UCCGGUUCUCGGAAAUAAUUAUGCUACUUUUGUGCAAAAAUAACAGCAUUUUUGUACAAAUUGCAUAAAAAUUUAAAUUGC ................................................((((..((((((....(((((((((((((......)))))))))))))..))))))..))))....... (-17.48 = -17.45 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:55 2006