Locus 3617

Sequence ID 3R_DroMel_CAF1
Location 9,762,822 – 9,762,920
Length 98
Max. P 0.812362
window5825

overview

Window 5

Location 9,762,822 – 9,762,920
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -31.84
Consensus MFE -26.16
Energy contribution -26.55
Covariance contribution 0.39
Combinations/Pair 1.08
Mean z-score -2.36
Structure conservation index 0.82
SVM decision value 0.65
SVM RNA-class probability 0.812362
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9762822 98 - 27905053
CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG
((((((..((((......))))...(.((((.....)))).)......)))))).....((((((((.....)))))))).................. ( -31.90)
>DroSec_CAF1 86173 98 - 1
CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG
((((((..((((......))))...(.((((.....)))).)......)))))).....((((((((.....)))))))).................. ( -31.90)
>DroSim_CAF1 86533 98 - 1
CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG
((((((..((((......))))...(.((((.....)))).)......)))))).....((((((((.....)))))))).................. ( -31.90)
>DroEre_CAF1 89554 98 - 1
CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGGGAGCACACGAGCCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG
((((....((((......)))).......(((.(((((..(((...(((((((((.....)))))))))..)))))))).)))...........)))) ( -29.70)
>DroYak_CAF1 89162 98 - 1
CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGCCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAAGUUGG
((((((.....(((..((((((((.(.((((.....)))).)....(((((((((.....)))))))))..))).)))))))).........)))))) ( -35.74)
>DroAna_CAF1 84134 94 - 1
CCAGCUACUCGCCAAUUACCGACACGAUCGCAAAUUGCCAGCACACGAGGCUGGUAAUUUGUUGGGCUUAAUGUCCGGUAUGCAAAUAUAUAAC----
..........((....((((.........(((((((((((((.......))))))))))))).((((.....)))))))).))...........---- ( -29.90)
>consensus
CCAGCUACUCGGCAAUUACCGACACGAUCGCAAAUUGCGAGCACACGAGGCUGGUAAUUUGCCGGGCUUAAUGUCCGGUAUGCAAAUACAUAACUUGG
...(((((((((......)))).......(((((((((.(((.......))).)))))))))(((((.....)))))))).))............... (-26.16 = -26.55 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:52 2006