Locus 3616

Sequence ID 3R_DroMel_CAF1
Location 9,761,257 – 9,761,349
Length 92
Max. P 0.570301
window5824

overview

Window 4

Location 9,761,257 – 9,761,349
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.37
Mean single sequence MFE -22.12
Consensus MFE -15.85
Energy contribution -16.18
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.570301
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9761257 92 - 27905053
ACGAGAGCUGUGCGGCGCAG----AGAAAAUGUUGCUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
..(((.((.((..(((.(((----..(.....)..))))))..)).)))))((((((((((((..(((....)))..))))))))))))....... ( -26.70)
>DroPse_CAF1 83218 94 - 1
ACGCGAACGCA--GACGCAGACGCAGAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
..(((...((.--...))...))).............(((......)))..((((((((((((..(((....)))..))))))))))))....... ( -21.80)
>DroEre_CAF1 88252 92 - 1
ACGAGAGCUGUGCGGCGCAG----AGAAAAUGUUGCUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
..(((.((.((..(((.(((----..(.....)..))))))..)).)))))((((((((((((..(((....)))..))))))))))))....... ( -26.70)
>DroWil_CAF1 72554 73 - 1
ACGAAAUC-----------------------UUUUUCAACCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
..((((..-----------------------..))))..........((..((((((((((((..(((....)))..))))))))))))....)). ( -15.60)
>DroAna_CAF1 82849 86 - 1
ACGUG----GAGCG--GAAA----AAAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
.((((----.....--....----.............(((......)))..((((((((((((..(((....)))..)))))))))))).)))).. ( -20.10)
>DroPer_CAF1 83434 94 - 1
ACGCGAACGCA--GACGCAGACGCAGAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
..(((...((.--...))...))).............(((......)))..((((((((((((..(((....)))..))))))))))))....... ( -21.80)
>consensus
ACGAGAAC_GA__G_CGCAG____AGAAAAUGUUGUUGGCCAAAUUGCCUCUAAUAACCGCAAUCGAUCGUUAUUUUUUGUGGUUAUUAAUACGGA
.((..................................(((......)))..((((((((((((..(((....)))..))))))))))))...)).. (-15.85 = -16.18 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006