Locus 3615

Sequence ID 3R_DroMel_CAF1
Location 9,760,957 – 9,761,077
Length 120
Max. P 0.607444
window5823

overview

Window 3

Location 9,760,957 – 9,761,077
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.14
Mean single sequence MFE -31.62
Consensus MFE -29.02
Energy contribution -28.98
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.18
Structure conservation index 0.92
SVM decision value 0.15
SVM RNA-class probability 0.607444
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9760957 120 + 27905053
ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACCAGCGAAC
....(((((((..(((.(((((((.....(((....)))................(((((......(((......)))...)))))))).))))..))).))))).((......)))).. ( -34.10)
>DroSec_CAF1 84326 113 + 1
ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACC-------
.((...(((((..(((.(((((((.....(((....)))................(((((......(((......)))...)))))))).))))..))).)))))..))....------- ( -32.40)
>DroSim_CAF1 84709 113 + 1
ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAAGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACC-------
.((((((..((((((....((((((....))))))..))))))....))))))..(((((......(((......)))...))))).............(((....)))....------- ( -32.10)
>DroEre_CAF1 87995 106 + 1
ACGAUCGGUGUUUGUGUUGAGUGGUCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACUGCACCACCUCACCCACUGCACCA--------------
......(((((..(((.((((((((...........(((((..((.......)))))))((.....(((......))).....)))))).))))..))).))))).-------------- ( -30.10)
>DroYak_CAF1 87545 106 + 1
ACGAUCGGUGUUUGUGUUGAGUGGUCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACAGCACCACUGCAACGCCUUACCCACUGCACCA--------------
......(((((..((((((((((((.((........(((((..((.......)))))))((......))......)))))))).))))))..........))))).-------------- ( -29.40)
>consensus
ACGAUCGGUGUUUGUGUUGAGUGGCCGUCGCCAUUAGGCAAAUUCAACGAUCGAUUGCCGCUCCAUUGCUCCACUGCACCACGGCACCACCUCACCCACUGCACCAGCGAACC_______
......(((((..(((..(((((((.((((((....)))....((...))..))).)))))))...(((......)))..................))).)))))............... (-29.02 = -28.98 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:50 2006