Locus 3614

Sequence ID	3R_DroMel_CAF1
Location	9,758,946 – 9,759,038
Length	92
Max. P	0.950128

overview

Window 2

Location	9,758,946 – 9,759,038
Length	92
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	80.59
Mean single sequence MFE	-15.30
Consensus MFE	-9.90
Energy contribution	-10.22
Covariance contribution	0.32
Combinations/Pair	1.21
Mean z-score	-2.34
Structure conservation index	0.65
SVM decision value	1.40
SVM RNA-class probability	0.950128
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9758946 92 + 27905053
UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGUAUUAUAUAUAUAC--AUAUAUAUUGUAUACUGCAUAUUGCUUCCCUCCACCGAUUCC
(((.....(((..((((.......(((((((((......(((((((....--))))))).)))))))))....))))..))).....))).... ( -18.00)
>DroSec_CAF1 82288 82 + 1
UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGCAUUAAA------C--AUAUAUAU----UACUGCAUAUAGCUUCCCUCCACCGAUUCC
.....(((((((((((...(((....)))..))))))......------.--........----....((.....)).........)))))... ( -13.60)
>DroSim_CAF1 82208 81 + 1
UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGCAUUA-A------U--AUAUAUAU----UACUGCAUAUAGCUUCCCUCCACCGAUUCC
.....(((((((((..........)))).(((((.(((.((-(------(--(....)))----)).))))))))...........)))))... ( -14.90)
>DroEre_CAF1 85834 80 + 1
UCGUCAUCGGGCUGUAAAUUACCACAGUAU--AUAGCAUUAAAU--------AUGUACAU----AUAUACGUAUAGCUGCCCUCCACCGAUUCA
.....((((((((((........)))))..--...(((....((--------(((((...----...)))))))...)))......)))))... ( -16.30)
>DroYak_CAF1 85431 88 + 1
UCGUCAUCGGGCUGUAAAUUACCCCAGUAU--AUAGCAUUAUAUGGAUAUAUAUAUACCU----ACAUACAUGAAUCUCCCCUUCACCGAUUCC
.....(((((((((((.(((.....))).)--)))))..((((((......))))))...----......................)))))... ( -13.70)
>consensus
UCGUCAUCGGGCUGUAAAUUACCCCAGUAUAUAUAGCAUUAAAU_____C__AUAUAUAU____UACUGCAUAUAGCUUCCCUCCACCGAUUCC
.....(((((((((((...(((....)))..))))))................(((((............)))))...........)))))... ( -9.90 = -10.22 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:49 2006