Locus 3611

Sequence ID 3R_DroMel_CAF1
Location 9,746,899 – 9,746,992
Length 93
Max. P 0.679360
window5819

overview

Window 9

Location 9,746,899 – 9,746,992
Length 93
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.73
Mean single sequence MFE -30.06
Consensus MFE -20.07
Energy contribution -20.47
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.67
SVM decision value 0.30
SVM RNA-class probability 0.679360
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9746899 93 - 27905053
CAUUCACAUCCACAUC------------CACAUCCAUUGGGCGACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUC
((((..((((..((((------------.....((((((.....)))))).))))..------------))))..))))(((((.((.((.(((......))))).))))))).... ( -31.00)
>DroSec_CAF1 70318 84 - 1
CA------UCCACAUC------------CACAUCCAUUGGGCGACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCU---
..------((((..((------------((...((((((.....))))))...))))------------..))))...((((((.((.((.(((......))))).))))))))--- ( -29.70)
>DroSim_CAF1 70268 81 - 1
CA------UCCA------------------CAUCCAUUGGGCGACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCUGUU
((------((..------------------(((((((((.....))))))..)))..------------))))..(((((((((.((.((.(((......))))).))))))))))) ( -27.10)
>DroEre_CAF1 73061 99 - 1
CA------UCCACAUC------------CACAUCCAUUGGGCCACAAUGGCGAUGGAGAUGGAGAUGGAGAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUU
..------((((..((------------((..((((((..(((.....)))))))))..))))..))))..........(((((.((.((.(((......))))).))))))).... ( -34.50)
>DroYak_CAF1 72767 99 - 1
CA------UCCACAUCCACAACCGCAUCCACAUCCAUUGGGCCACAAUGGCGAUGGA------------GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUU
..------..................((((..((((((..(((.....)))))))))------------..))))....(((((.((.((.(((......))))).))))))).... ( -28.00)
>consensus
CA______UCCACAUC____________CACAUCCAUUGGGCGACAAUGGCGAUGGA____________GAUGGAAAUGGCAGCAUCGGAAUUGGCAUCGCAAUCGGAGUUGCAGUU
........((((..((..............(((((((((.....))))))..)))..............))))))....(((((.((.((.(((......))))).))))))).... (-20.07 = -20.47 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:46 2006