Locus 3610

Sequence ID 3R_DroMel_CAF1
Location 9,742,518 – 9,742,612
Length 94
Max. P 0.832840
window5818

overview

Window 8

Location 9,742,518 – 9,742,612
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 86.60
Mean single sequence MFE -21.30
Consensus MFE -18.06
Energy contribution -18.62
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.71
Structure conservation index 0.85
SVM decision value 0.72
SVM RNA-class probability 0.832840
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9742518 94 - 27905053
AAAAAUGCAGACCAUCUCGGUGGCACUAAGAACGAAGGUGGGAUGCUCUAAGGGCUUAAUAAAUCUAUAAAAUUGCAAAGCACAUUUAUGGUAA
......(((..((((((((.............)).))))))..)))..................(((((((..(((...)))..)))))))... ( -19.52)
>DroSec_CAF1 66216 94 - 1
AAAAAUGCAGACCAUCUCGGUGGCACUAAGAACGAAGGUGGGAUGCUCUACGGGCUUAAUAAACCUAUAAAAUUGCAAAACAAAAUUAUGGUAA
......(((..((((((((.............)).))))))..)))((....))........(((.((((..(((.....)))..))))))).. ( -18.42)
>DroSim_CAF1 65991 94 - 1
AAAAAUGCAGACCAUCUCGGUGGCACUCAGAACGAAGGUGGGAUGCUCUACGGGCUUAAUAAACCUAUAAAAUUCCAAAACAAAAUUAUGGUAA
......(((..((((((((.............)).))))))..)))((....))........(((.((((...............))))))).. ( -16.08)
>DroEre_CAF1 68691 94 - 1
AAAAAUGCAGACUACCUCGGGAGCACCAAUAACGAAGGUGGGAUGCUCUUCGGGACUAGUAAAUCUAUAAAAUUGUAAAACAAAUUUAUGGCAC
.....(((..(((((((..((((((((....((....)).)).))))))..)))..)))).....((((((.(((.....))).))))))))). ( -26.10)
>DroYak_CAF1 68361 94 - 1
AAAAAUGCAGACUUCCUCGGGAGCAGCCAGAACGAAGGUGGGAUGCUCUUUGGGCUUAAUAAAUCCAUAAACGUGCAAAACAAAUUUAUGGCAG
.....(((......(((..((((((.((...((....)).)).))))))..)))...........((((((..((.....))..))))))))). ( -26.40)
>consensus
AAAAAUGCAGACCAUCUCGGUGGCACUAAGAACGAAGGUGGGAUGCUCUACGGGCUUAAUAAAUCUAUAAAAUUGCAAAACAAAUUUAUGGUAA
......(((..((((((((.............)).))))))..)))..................(((((((.(((.....))).)))))))... (-18.06 = -18.62 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:45 2006