| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,731,175 – 9,731,266 |
| Length | 91 |
| Max. P | 0.968730 |
| Location | 9,731,175 – 9,731,266 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.47 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -13.23 |
| Energy contribution | -13.59 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9731175 91 + 27905053 UACUAGCUGUUAACAGCACUAAAUUGUGGCACUCUGUCAAAGGUCCCCCCC------CUUCAGUAUUGAAAUC--AGGGGGGGUUUU-UGGGG-------GAACCUA .....((((....))))..........((...(((.(((((((.(((((((------.(((......)))...--.)))))))))))-))).)-------)).)).. ( -32.50) >DroSec_CAF1 54848 89 + 1 UACUAGCUGUUAACAGCACUAAAUUGUGGCACUCUGUCAAAGGUCCCCC---------GUCAGUAUUGAAAUC--GGGGGG-GUUUU-GGGGGGG-----UAACCUA .....((((....))))..........((.(((((.((((((.((((((---------(((......))...)--))))))-.))))-)).))))-----)..)).. ( -34.10) >DroSim_CAF1 54636 94 + 1 UACUAGCUGUUAACAGCACUAAAUUGUGGCACUCUGUCAAAGGUCCCCC---------GCCAGUAUUGAAAUC--GGGGGG-GUUUU-GGGGGGGGGGGGGGGGGUA .....((((....))))(((......((((.....))))....((((((---------.((....(..(((((--.....)-)))).-.)....)).))))))))). ( -32.40) >DroEre_CAF1 56678 88 + 1 UACUAGCUGUUAACAGCACUAAAUUGUGGCACUCUGUCAAAGGUCCCCC---------CAAAGUAGAGAAAAGUGGGGGGGAGUGCAAUAGGG-------GAAC--- .....((((....)))).((...((((.((((((..........(((((---------((...(.....)...))))))))))))).)))).)-------)...--- ( -29.10) >DroYak_CAF1 56757 87 + 1 UACUAGCUGUUAACAGCACUAAAUUGUGGCACUCUGUCAAAGGUCCCCCCU-------CACAGUAGAGAAAUC--GGGGGG-CUUUUGUGGGG-------UAAC--- .....((((....)))).............((((((.((((((((((((((-------(......))).....--))))))-)))))))))))-------)...--- ( -33.00) >DroPer_CAF1 52103 94 + 1 UACUAGCUGUUAACAGCACUAAAUCGUGGCACUCUGUCAAAGGUCCCCCCACCGCACCUUCCGCAUGGAAGUG--GCGGAA-GUGCGGCA----------GCAGAUA ..((.((((((.....(((......)))(((((((((((..(((......)))....(((((....)))))))--)))).)-))))))))----------))))... ( -33.10) >consensus UACUAGCUGUUAACAGCACUAAAUUGUGGCACUCUGUCAAAGGUCCCCC_________CUCAGUAUUGAAAUC__GGGGGG_GUUUU_UGGGG_______GAAC_UA .....((((....)))).........((((.....))))....((((((..........................)))))).......................... (-13.23 = -13.59 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:43 2006