| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,730,946 – 9,731,041 |
| Length | 95 |
| Max. P | 0.509287 |
| Location | 9,730,946 – 9,731,041 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.44 |
| Mean single sequence MFE | -21.14 |
| Consensus MFE | -14.48 |
| Energy contribution | -15.70 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9730946 95 - 27905053 -----UGG--CGAUAAUGAAAACUGCGCUUA-----UAUACCGC-----CACAGUUUUCGCAUAAAUUUGUGGUUCAAUAAUCAUAAAUUUGGCUUUUAGAUCAUUAGCACA -----..(--(......((((((((.((...-----......))-----..))))))))((.(((((((((((((....))))))))))))))).............))... ( -23.40) >DroSec_CAF1 54619 95 - 1 -----UGC--CGAUAAUGAAAGCUGCGCUUA-----UAUACCGC-----CACGGUUUUCGCAUAAAUUUGUGGUUCAAUAAUCAUAAAUUUGGCUUUUAGAUCAUUAGCACA -----(((--..((..(((((((((((....-----...((((.-----..))))...))))(((((((((((((....))))))))))))))))))))....))..))).. ( -25.20) >DroSim_CAF1 54407 95 - 1 -----UGC--CGAUAAUGAAAACUGCGCUUA-----UAUACCGC-----CACGGUUUUCGCAUAAAUUUGUGGUUCAAUAAUCAUAAAUUUGGCUUUUAGAUCAUUAGCACA -----(((--..((...((((((((.((...-----......))-----..))))))))((.(((((((((((((....))))))))))))))).........))..))).. ( -23.70) >DroEre_CAF1 56449 95 - 1 -----UGC--CGAUAACGAAAACUGCGCUCA-----UAUACCGC-----CACAAUUUUCACAUAAAUUUGUGGUCCAAUAAUCAUAAAUUUGGCUUUUAAAUCAUUAGCACA -----.((--(......(((((.((.((...-----......))-----..)).)))))....(((((((((((......)))))))))))))).................. ( -16.00) >DroYak_CAF1 56515 105 - 1 GGAUUUGC--CGAUAACGAAAACUGCGCUUAUACUAUAUACCGC-----AACAGUUUUCGCAUAAAUUUGUGGACCAAUAAUCAUAAAUUUGGCUUUUAAAUCAUUAGCACA .(((((((--(.....(((((((((.((..............))-----..)))))))))...((((((((((........)))))))))))))....)))))......... ( -22.44) >DroAna_CAF1 51216 90 - 1 -----UGUCUCGAUAACGA-----------------UAAACCGCCUGAUCGCAAUUGUCGCAUAAAUUUGUGGUCCAAUAAUCAUAAAUUUGGCUUUUAAAUCAUUAGCACA -----......(((...((-----------------(((...((......))..)))))((.((((((((((((......))))))))))))))......)))......... ( -16.10) >consensus _____UGC__CGAUAACGAAAACUGCGCUUA_____UAUACCGC_____CACAGUUUUCGCAUAAAUUUGUGGUCCAAUAAUCAUAAAUUUGGCUUUUAAAUCAUUAGCACA ...........(((...((((((((..........................))))))))((.((((((((((((......))))))))))))))......)))......... (-14.48 = -15.70 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006