| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,394,859 – 1,394,964 |
| Length | 105 |
| Max. P | 0.742523 |
| Location | 1,394,859 – 1,394,964 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 91.74 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -17.75 |
| Energy contribution | -18.75 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.742523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1394859 105 + 27905053 A-GGGGCGACAGCAAAAACAA--AAGUGUGGAAAAUCACAAAACCAAUAAAUUUCUCCAUUUAUUUCAAAGCACUGGGCCCCAGGAAAAUGCCAACCAAGGAGCGCCA .-(((((..(((.........--...((((......)))).....(((((((......)))))))........))).))))).((......((......))....)). ( -21.70) >DroSec_CAF1 10720 107 + 1 A-GGGGCGACAGCAACAACAAAAAAGUGUGGAAAAUCACAAAACCAAUACAUUUCUCCAUUUAUUUGAGAGCACUGGGCCCCAGGAAAAUGCCAACCAAGGAGCGCCA .-(((((..(((......((((.(((((..((((.................))))..))))).))))......))).))))).((......((......))....)). ( -25.43) >DroSim_CAF1 10686 107 + 1 A-GGGGCGACAGCAACAACAAAAAAGUGUGGAAAAUCACAAAACCAAUACAUUUCUCCAUUUAUUUGAAAGCACUGGGCCCCAGGAAAAUGCCAACCAAGGAGCGCCA .-(((((..(((......((((.(((((..((((.................))))..))))).))))......))).))))).((......((......))....)). ( -25.43) >DroEre_CAF1 11734 108 + 1 AAGGGGCGACAGCAACAACAAAAAAGUGCGGAAAAUCACAAAACCAAUACAUUUCUCCAUUUAUUUGAAAGCACUGGGCCCCAGGAAAAUGCCAACUAAGGAGCGCAA ..(((((..(((......((((.(((((.(((((.................))))).))))).))))......))).))))).((......))............... ( -22.63) >DroYak_CAF1 10686 105 + 1 AAGGGGCGACAGCAA---CAAAAAAGUGCGGAAAAUCCCAAAACUUAUACAUUUCUCCAUUUAUUUGAAAGCCCUAACCCCAAGGAAAAUGCCAACCAAGGAGCGCAA ..((((..(..((..---((((.(((((.(((((.................))))).))))).))))...))..)..))))........(((...(....)...))). ( -17.53) >consensus A_GGGGCGACAGCAACAACAAAAAAGUGUGGAAAAUCACAAAACCAAUACAUUUCUCCAUUUAUUUGAAAGCACUGGGCCCCAGGAAAAUGCCAACCAAGGAGCGCCA ..(((((..(((......((((.(((((..((((.................))))..))))).))))......))).))))).((......))............... (-17.75 = -18.75 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:14 2006