Locus 3599

Sequence ID 3R_DroMel_CAF1
Location 9,707,302 – 9,707,396
Length 94
Max. P 0.995459
window5799

overview

Window 9

Location 9,707,302 – 9,707,396
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 93.72
Mean single sequence MFE -26.86
Consensus MFE -22.32
Energy contribution -22.96
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -2.53
Structure conservation index 0.83
SVM decision value 2.58
SVM RNA-class probability 0.995459
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9707302 94 - 27905053
UGGCGCCAAUGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAAACAAGAGAUACAAUGGCGCCCAGAUACAUUUACAAUUGACUUAAC
.(((((((.((..((..((((((((((....))))))))))..)).....(....)...)).)))))))......................... ( -27.00)
>DroSec_CAF1 31259 94 - 1
UGGCGCCAAAGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAUACAAAAGCUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC
.(((((((...(((((.((((((((((....))))))))))...(.....)..)))))....)))))))......................... ( -29.70)
>DroSim_CAF1 31000 94 - 1
UGGCGCCAAAGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAUACAAGAGCUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC
.(((((((...(((((.((((((((((....))))))))))...(.....)..)))))....)))))))......................... ( -30.10)
>DroEre_CAF1 32514 94 - 1
UGGCGCCAAAGAGCUUAAAAGUUUUGGAUACCCGAAGCUGGCCAGGGACACAAGAGAUAGAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC
.(((((((..(.(((....((((((((....)))))))))))).(.....)...........)))))))......................... ( -23.70)
>DroYak_CAF1 32277 94 - 1
UGGCGCCAAAGAGCUUAAAAGUUUUGGAUACCCGUGGCUGUCCAGAGUUACAAGAGAUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC
.(((((((.....(((.....(((((((((.(....).)))))))))......)))......)))))))......................... ( -23.80)
>consensus
UGGCGCCAAAGAGCUUAACAGUUUUGGAUACCCGAAGCUGUCCAGAGAUACAAGAGAUACAAUGGCGCCCAGAUACAGAUACAAUUGACUUAAC
.(((((((.....((..((((((((((....))))))))))..)).....(....)......)))))))......................... (-22.32 = -22.96 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006