Locus 3597

Sequence ID 3R_DroMel_CAF1
Location 9,705,700 – 9,705,790
Length 90
Max. P 0.644721
window5796

overview

Window 6

Location 9,705,700 – 9,705,790
Length 90
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 79.81
Mean single sequence MFE -23.05
Consensus MFE -13.32
Energy contribution -14.52
Covariance contribution 1.20
Combinations/Pair 1.18
Mean z-score -1.83
Structure conservation index 0.58
SVM decision value 0.23
SVM RNA-class probability 0.644721
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9705700 90 + 27905053
CAGGAUUCACGAUCCUGAUCCCCCGC--GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG
(((((((...))))))).......((--(...((((((((.((((.(((..........))).))))..))))))))..))).......... ( -23.50)
>DroSec_CAF1 29684 90 + 1
CAGGAUUCACGAUCCUGAUCCCCAGC--GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG
(((((((...))))))).....((((--(...((((((((.((((.(((..........))).))))..))))))))..)).)))....... ( -24.20)
>DroSim_CAF1 29407 90 + 1
CAGGAUUCACGAUCCUGAUCCCCAGC--GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG
(((((((...))))))).....((((--(...((((((((.((((.(((..........))).))))..))))))))..)).)))....... ( -24.20)
>DroEre_CAF1 30905 82 + 1
CAGGAUU-------CUGAUCCGC-GC--GAUUAGUUAGUCCUUCUCGCUGACAAUCCAGGGCUAGAAUAGACUAACUUCUGCCUGAUCCUCG
(((((((-------(((..((..-(.--((((.((((((.......))))))))))).))..))))))(((......))).))))....... ( -22.10)
>DroYak_CAF1 30643 82 + 1
CAGGAUU-------CUGAUCCGC-GC--GAUUAGUUAGUCCUUUUCGCUGGCAAUCCAGGGCUAGAAUAGACUAGCUUCUGCCUGAUCUCCC
..(((..-------..((((.(.-((--(...((((((((..((((.((((....)))).)...)))..))))))))..)))).))))))). ( -24.40)
>DroAna_CAF1 27353 81 + 1
CAGGAUUCCAUCUACUGAUCCCCCCCAGGAU--------CUGUUGCAUUGCCAAUCCCGGC-UGCA--AGACUAACUUUUCCCUGAUCCCUG
((((............(((((......))))--------)..(((((..(((......)))-))))--)............))))....... ( -19.90)
>consensus
CAGGAUUCACGAUCCUGAUCCCC_GC__GAUUAGUUAGUCCUUUUCGGCGACAAUCCAGGCCUAGAAUAGACUAACUUCUGCCUGAUCCCCG
((((...........(((((........)))))(((((((..(((.(((..........))).)))...))))))).....))))....... (-13.32 = -14.52 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:25 2006