| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,701,782 – 9,701,882 |
| Length | 100 |
| Max. P | 0.790819 |
| Location | 9,701,782 – 9,701,882 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -33.77 |
| Consensus MFE | -31.93 |
| Energy contribution | -32.60 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9701782 100 - 27905053 CGGAUAGGGAUGGGGAUGGGAAUGGGGAUGGGGAUGGGUAUACAGAUACUCGGAUGACCACGCACAGAUACAGAUGCAGAUACGUUCCCUUCCCAGCACG ......(...((((((.(((((((....(((...(((((((....))))))).....))).((((.......).))).....)))))))))))))...). ( -31.10) >DroSec_CAF1 25789 94 - 1 CGGAUAGGGAAGGGGAUGGGAA------UGGGGAUGGGUAUACAGAUACUCGGAUGACCACGCACAGAUACAGAUGCAGAUACGUUCCCUUCCCAGCCCG ......(((...((((.(((((------((((..(((((((....))))))).....))..((((.......).))).....))))))).))))..))). ( -35.10) >DroSim_CAF1 24981 100 - 1 CGGAUAGGGAAGGGGAUGGCAAUGGGGAUGGGGAUGGGUAUACAGAUACUCGGAUGACCACGCACAGAUACAGAUGCAGAUACGUUCCCUUCCCAGACCG (((...((((((((((((..........(((...(((((((....))))))).....))).((((.......).))).....))))))))))))...))) ( -35.10) >consensus CGGAUAGGGAAGGGGAUGGGAAUGGGGAUGGGGAUGGGUAUACAGAUACUCGGAUGACCACGCACAGAUACAGAUGCAGAUACGUUCCCUUCCCAGCCCG (((...((((((((((((..........(((...(((((((....))))))).....))).((((.......).))).....))))))))))))...))) (-31.93 = -32.60 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:21 2006