Locus 3591

Sequence ID 3R_DroMel_CAF1
Location 9,697,290 – 9,697,400
Length 110
Max. P 0.999941
window5788

overview

Window 8

Location 9,697,290 – 9,697,400
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 91.45
Mean single sequence MFE -27.56
Consensus MFE -24.74
Energy contribution -25.66
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -3.20
Structure conservation index 0.90
SVM decision value 4.70
SVM RNA-class probability 0.999941
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9697290 110 + 27905053
UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUCCAUAAUAAGGAUCUCAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC
..............(((((((((....((((.....((((((((.......)))))))).........((((.....))))......))))....)))))))))...... ( -31.70)
>DroSec_CAF1 21359 110 + 1
UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUUUUCAAUAAGGAUCUAAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC
..............(((((((((....((((......(((((((.......)))))))..........((((.....))))......))))....)))))))))...... ( -30.30)
>DroSim_CAF1 20486 110 + 1
UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUUCACAAUAAGGAUCUCAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC
..............(((((((((....((((......(((((((.......)))))))..........((((.....))))......))))....)))))))))...... ( -30.30)
>DroEre_CAF1 22158 110 + 1
UUGUCCAAUUACAGCGCUCUCGAUUCAAGCCUUCCAUAAUAAGGGUCUGAACCUUGUUAAUUCAACCCGUUUUCCCAGAACUUCAACGGUUGCAUUAGAGGGCAACACCC
...............(((((((.((((..((((........))))..)))).)....((((.(((((.(((.............)))))))).))))))))))....... ( -24.62)
>DroYak_CAF1 21776 110 + 1
UUGUCCAAUUACAGUGCUCUCUAUCUAAGCCUUCCAUAAUAAGGAUCAGAACCCAGUUAAUUCAACCCGUUUUCCCAGAACUUCAACGCUUGCAUUAGAGGGCAACACCC
..............(((((((((..(((((..(((.......))).......................((((.....))))......)))))...)))))))))...... ( -20.90)
>consensus
UUGUCCAAUUACAGUGCCCUCUAUUUAAGCCCUCCAUAAUAAGGAUCUCAGCCUUGUUAAUUUAACCCGUUUUCCCAGAACUUCAACGGCUGCAUUAGAGGGCAACACCC
..............(((((((((....((((.....((((((((.......)))))))).........((((.....))))......))))....)))))))))...... (-24.74 = -25.66 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:17 2006