Locus 3590

Sequence ID 3R_DroMel_CAF1
Location 9,692,963 – 9,693,059
Length 96
Max. P 0.950068
window5787

overview

Window 7

Location 9,692,963 – 9,693,059
Length 96
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 73.54
Mean single sequence MFE -16.73
Consensus MFE -6.22
Energy contribution -7.54
Covariance contribution 1.32
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.37
SVM decision value 1.40
SVM RNA-class probability 0.950068
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9692963 96 - 27905053
--AUACAUC-AA-ACA--CUUAUUGCCAUCCACAUAUGAUGGCCAUUUACUGGCAAACUUUGUGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAACU
--.......-..-...--......((((((.......))))))................((((((.((((.((((.....))))...))))))))))..... ( -18.20)
>DroSim_CAF1 16260 83 - 1
-------------------UUAUUGCCAUCCACAUAUGAUGGCCAUUUACUGGCAAACUUCGUGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAGCU
-------------------.....((((((.......))))))..................((((.((((.((((.....))))...))))))))....... ( -17.00)
>DroEre_CAF1 17440 98 - 1
AAAUUCGUC-AG-AAA--CUCAAUGGCAUCCACAUAUGUUGGCCAUUUACUGGCAAACUCUGGGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAACU
......(((-(.-...--..(((((((..(((.....(((.((((.....)))).)))..))))))))))..)))).......................... ( -19.80)
>DroYak_CAF1 16956 98 - 1
AAAUACAUC-AA-ACA--CUUAUUGCCCUCCACAUAUGAUGGCCAUUUACCGGCAAACUCUGUGCCAUUGCAUGAUAGACUCAUUACCAAUGCACAACAACU
.....((((-(.-...--..................)))))(((.......)))......(((((.((((.((((.....))))...)))))))))...... ( -15.95)
>DroAna_CAF1 15457 87 - 1
UAAGUCAUUCUGAAUAAUAUUAUU----UCCACAUAUGAUGGGGAACUAUUGUCA-----------AUUGCAUGAUAGACUUAUUACAUAUCCACAAAAUAU
((((((................(.----.((((....).)))..).....(((((-----------......)))))))))))................... ( -12.70)
>consensus
_AAUACAUC_AA_ACA__CUUAUUGCCAUCCACAUAUGAUGGCCAUUUACUGGCAAACUCUGUGCCAUUGCAUGAUAAACUCAUUACCAAUGCACAACAACU
.........................................((((.....)))).......((((.((((.((((.....))))...))))))))....... ( -6.22 =  -7.54 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:16 2006