Locus 3588

Sequence ID 3R_DroMel_CAF1
Location 9,692,279 – 9,692,374
Length 95
Max. P 0.520325
window5785

overview

Window 5

Location 9,692,279 – 9,692,374
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.45
Mean single sequence MFE -27.05
Consensus MFE -17.40
Energy contribution -17.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.520325
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9692279 95 - 27905053
AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----ACCAGGACGGAAAA-------AAA--------------
....(((((((...........)))).((((....))))..)))((((((..((((((......)))...)))..)))----)))...........-------...-------------- ( -22.60)
>DroPse_CAF1 12423 113 - 1
AAAACUUGGCCAACAAUUUAUGGGCCACUUGAAUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----C---GAACCGAACCAACCUGGCAAGGAUGUGGGAUGGG
....(((((((...........)))).((((....))))..)))(((.(((.((((((......))))))..))).))----)---...(((..(((.(((....)))...)))..))). ( -30.80)
>DroEre_CAF1 16758 92 - 1
AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----ACCAGAGCUGAA----------AA--------------
......(((((...........)))))..........(((....((((((..((((((......)))...)))..)))----)))...)))...----------..-------------- ( -23.70)
>DroYak_CAF1 16266 102 - 1
AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----ACCAGAGCUGAAAAAAGCUGAAAA--------------
....(((((((...........)))).((((....))))..)))((((((..((((((......)))...)))..)))----)))..((((......)))).....-------------- ( -26.80)
>DroAna_CAF1 14691 109 - 1
AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAACCAGAACCAGGG--GCAGAACCCUGGAAC---------AAAGG
....(((((((...........)))).((((....))))..)))(((.(((.((((((......))))))..))).)))....((((((--......))))))...---------..... ( -32.80)
>DroPer_CAF1 12272 108 - 1
AAAACUUGGCCAACAAUUUAUGGGCCACUUGAAUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC----C---GAACCGAA-----CUGGCAAGGAUGUGGGAUGGG
....(((((((...........)))).((((....))))..)))(((.(((.((((((......))))))..))).))----)---...((.(.-----((.(((....))).)).).)) ( -25.60)
>consensus
AAAACUUGGCCAACAAUUUAUGGGCCACUUGACUACAAGCAAAGGGUGUUGAGGUUGCACGCGAGCAAUCACCAGAAC____ACCAGAACCGAA_A___CUGGAAA______________
....(((((((...........)))).((((....))))..)))((((.....(((((......)))))))))............................................... (-17.40 = -17.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:14 2006