Locus 3587

Sequence ID 3R_DroMel_CAF1
Location 9,688,690 – 9,688,780
Length 90
Max. P 0.635463
window5784

overview

Window 4

Location 9,688,690 – 9,688,780
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.13
Mean single sequence MFE -31.70
Consensus MFE -19.95
Energy contribution -19.57
Covariance contribution -0.39
Combinations/Pair 1.19
Mean z-score -1.75
Structure conservation index 0.63
SVM decision value 0.21
SVM RNA-class probability 0.635463
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9688690 90 + 27905053
--GCGUC-----GAAACUUGGCUAACUUCGGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCUAUG------UUGCCUUUUCAG--------------GCAG
--(((((-----(...((..((.(((....))))---)..)).........(((((((((....))))))))).))))))....------.(((((....))--------------))). ( -29.90)
>DroPse_CAF1 8586 109 + 1
--GCGUCAGCGAAAAACUUGGCUAACUUCAGUUG---CCGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCGAUG------UUGCCUUUGCAACAUUUUCCAGAGCCGCCG
--(((((.((.((..(((((((.(((....))))---))(((.....))).............))))..)).)).)))))((((------((((....)))))))).............. ( -34.80)
>DroEre_CAF1 12959 90 + 1
--GCGUC-----GAAACUUGGUUAACUUCGGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCUGUG------UUGCCUUUUCAG--------------GCAG
--(((((-----(...((..((.(((....))))---)..)).........(((((((((....))))))))).))))))....------.(((((....))--------------))). ( -27.90)
>DroYak_CAF1 12561 96 + 1
--GCGUC-----GAAACUUGGCUAACUUCGGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCUGUGUAGCAGUUGCCUUUUCAG--------------GCAG
--(((((-----(...((..((.(((....))))---)..)).........(((((((((....))))))))).))))))...........(((((....))--------------))). ( -29.90)
>DroAna_CAF1 11485 94 + 1
--GCGUU-----GAAACUUGGCUAACUUUGGUUGCUGCUGGGCCGCACCCAUUUAUUAUUUUAAAGUAGUUGGCCGGCGCGAUG------UUGCCUUUUCAG-------------CGCUG
--(((((-----((((...(((.(((....(((((.(((((.(((.((...((((......))))...))))))))))))))))------))))).))))))-------------))).. ( -35.20)
>DroPer_CAF1 8518 111 + 1
CAGCGUCAGCGAAAAACUUGGCUAACUUCAGUUG---CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCGAUG------UUGCCUUUGCAACAUUUUCCAGAGCCGCCG
..(((.(.(((......((((((((((.((((((---.((((.....)))).)))))........).)))))))))))))((((------((((....)))))))).......).))).. ( -32.50)
>consensus
__GCGUC_____GAAACUUGGCUAACUUCGGUUG___CUGGGCCGCACCCAUUAAUUAUUUUAAAGUAGUUGGCCGACGCGAUG______UUGCCUUUUCAG______________GCAG
..(((((............((((((((.(..........(((.....))).((((.....)))).).)))))))))))))........................................ (-19.95 = -19.57 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:13 2006