| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,687,974 – 9,688,074 |
| Length | 100 |
| Max. P | 0.519921 |
| Location | 9,687,974 – 9,688,074 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.95 |
| Mean single sequence MFE | -39.92 |
| Consensus MFE | -20.75 |
| Energy contribution | -23.78 |
| Covariance contribution | 3.03 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.52 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9687974 100 + 27905053 ---CCGACUCCGACUCGAU--------CCGCGCCAGC---UUUGGGCAUCCGCUUGGAACAGACUUCUGACUGCGAGGCCAACAUGGCAGGCAGAUCGUUUUCGGGGUAAUUAA ---...(((((((..((((--------(.((((((..---....(((...((((..(((.....)))..)..)))..)))....))))..)).)))))...)))))))...... ( -36.90) >DroSec_CAF1 12153 100 + 1 ---CCAACUCCGACUCGAU--------CCGCGCCAGC---UAAGGGCCUCCGCUUGGUCCAGACUUCUGACUGCGAGGCCAACAUGGCAGGCAGAUCGUUUUCGGGGUAAUUAA ---...(((((((..((((--------(.((((((..---....((((((.((..((((.((....))))))))))))))....))))..)).)))))...)))))))...... ( -44.20) >DroSim_CAF1 11267 100 + 1 ---CCGACUCCGACUCGAU--------CCGCGCCAGC---UUUGGGCCUCCGCUUGGGCCAGACUUCUGACUGCGAGGCCAACAUGGCAGGCAGAUCGUUUUCGGGGUAAUUAA ---...(((((((..((((--------(.((((((..---....((((((.((..((..(((....))).))))))))))....))))..)).)))))...)))))))...... ( -42.90) >DroEre_CAF1 12190 108 + 1 ---CCAGCUCCGACUCGAUCCGGCACUCCGCGCCAGC---UUUGGGCCUCCGUUUGGGCCAGACUUCAGACUGCGGGGCCAACUUGGCAGGCGGAUCGUUUUCGGGGUAAUUAA ---...(((((((..((((((.((.....))(((.((---(...((((((((((((((......))))))).).)))))).....))).)))))))))...)))))))...... ( -48.00) >DroYak_CAF1 11783 102 + 1 ---------CGGACUCGUUCCGGCACUCCGCGCCAGC---UUUGGGCCUCCGUUUGGGCCAGACUUCUGACUGCGAGGCCAACAUGGCAGGCAGAUCGUUUUCGGGGUAAUUAA ---------((((.....))))..(((((..(((.((---(...((((((.((..((..(((....))).)))))))))).....))).))).((......)))))))...... ( -35.90) >DroAna_CAF1 10752 96 + 1 GCCACAAUUCCGA-----------AGUUCGCUGCAGCCUGUUUGGGACUCCAUUUGAGCCAGACUUU-------AAGGCCAACAUGGCAGGCAGCUCGUUUUCGGGGUAAUUAA ......(((((((-----------((..((..((.((((((((((..(((.....)))))))))...-------...(((.....))))))).)).)).)))))))))...... ( -31.60) >consensus ___CCAACUCCGACUCGAU________CCGCGCCAGC___UUUGGGCCUCCGCUUGGGCCAGACUUCUGACUGCGAGGCCAACAUGGCAGGCAGAUCGUUUUCGGGGUAAUUAA ......(((((((..((((..............(((....(((((.((.......)).)))))...))).((((...(((.....)))..))))))))...)))))))...... (-20.75 = -23.78 + 3.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:12 2006