Locus 3583

Sequence ID 3R_DroMel_CAF1
Location 9,679,401 – 9,679,513
Length 112
Max. P 0.996931
window5778

overview

Window 8

Location 9,679,401 – 9,679,513
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.23
Mean single sequence MFE -25.13
Consensus MFE -23.10
Energy contribution -23.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.92
SVM decision value 2.77
SVM RNA-class probability 0.996931
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9679401 112 - 27905053
UGCGAAAUUAAUGUGCAUACAGUUGGCCACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUAUUCU
...(((.......((((((.(((((.((.....)))))))))))))....((((((((((......(((........)))......)))))))))).........--------...))). ( -24.10)
>DroSec_CAF1 3709 112 - 1
UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUAUUCU
...(((.......((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------...))). ( -23.70)
>DroSim_CAF1 2755 112 - 1
UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUAUUCU
...(((.......((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------...))). ( -23.70)
>DroEre_CAF1 3651 112 - 1
UGAGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CUGUUCU
..((((.......((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------...)))) ( -24.10)
>DroYak_CAF1 2935 112 - 1
UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA--------CCGUUCU
.(((.........((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).........--------.)))... ( -24.40)
>DroAna_CAF1 3030 120 - 1
GGGGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCAACCAAGAUCGGUUCG
(((..........((((((.(((((.((....)).)))))))))))....((((((((((......(((........)))......)))))))))).....)))((((......)))).. ( -30.80)
>consensus
UGCGAAAUUAAUGUGCAUACAGUUGGCAACUUUGGUAAUUUAUGCAAAUAAAACGAUCGUAAAUUUGGCAUUAAAACGCUUAUUAAAUGAUCGUUUAUUAACCCA________CUAUUCU
...(((.......((((((.(((((.(......).)))))))))))....((((((((((......(((........)))......))))))))))....................))). (-23.10 = -23.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:07 2006