Locus 3582

Sequence ID 3R_DroMel_CAF1
Location 9,676,834 – 9,676,925
Length 91
Max. P 0.698175
window5777

overview

Window 7

Location 9,676,834 – 9,676,925
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 81.95
Mean single sequence MFE -15.30
Consensus MFE -12.30
Energy contribution -12.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.80
SVM decision value 0.35
SVM RNA-class probability 0.698175
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9676834 91 + 27905053
CCAACUCAAAUAAGCCACCAUGCUUCGCAAGCCUGUGCUAGUUUUUAAUAAGUAAUACAUUUAAAGAACUAGAAAUAGUUAGGUUAGUACU
...........((((......)))).((.((((((..(((((((((..(((((.....)))))))))))))).......)))))).))... ( -15.70)
>DroSec_CAF1 1178 84 + 1
CCAACU-GAAUUCGCCAUCAUGCUGCUUAAGCCUGUUCUAGUUUUUAAUAAGUGAUUAAUUUAAAGAACUAGAAAUUCUUCA------ACC
.....(-(((........((.(((.....))).))(((((((((((..(((((.....))))))))))))))))....))))------... ( -15.80)
>DroSim_CAF1 224 84 + 1
CCAACU-AAAUUAGCCAUCAUGCUGCUCAAGCCUGUUCUAGUUUUUAAUAAGUGACUAAUUUAAAGAACUAGAAAUUGUUCA------ACU
......-...........((.(((.....))).))(((((((((((..(((((.....))))))))))))))))........------... ( -14.40)
>consensus
CCAACU_AAAUUAGCCAUCAUGCUGCUCAAGCCUGUUCUAGUUUUUAAUAAGUGAUUAAUUUAAAGAACUAGAAAUUGUUCA______ACU
..................((.(((.....))).))(((((((((((..(((((.....))))))))))))))))................. (-12.30 = -12.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006