Locus 3569

Sequence ID 3R_DroMel_CAF1
Location 9,669,251 – 9,669,353
Length 102
Max. P 0.655261
window5735

overview

Window 5

Location 9,669,251 – 9,669,353
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.46
Mean single sequence MFE -26.66
Consensus MFE -20.24
Energy contribution -20.84
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.76
SVM decision value 0.25
SVM RNA-class probability 0.655261
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9669251 102 + 27905053
-----CCAUUCGCCGUUUCAUUAUCAAACUGGCCA-AGAACAUAAUUUGACUAUGGCCAAACAUUUGGCAACAGCAACAGC------------GAAUGCGAGGGCCAAUUUGCAGUUCUC
-----.(((((((.(((.(..........((((((-....((.....))....))))))......((....))).))).))------------))))).((((((.........)))))) ( -26.90)
>DroSec_CAF1 61033 101 + 1
-----CCAUUCGCCGUUUCAUUAUCA-ACUGGCCA-AGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGC------------GAAUGCGAGGGCCAAUUUGCAGUUCUC
-----.(((((((.(((.(.......-..(((((.-....((.....)).....)))))......((....))).))).))------------))))).((((((.........)))))) ( -25.30)
>DroSim_CAF1 63938 102 + 1
-----CCAUUCGCCGUUUCAUUAUCAAACUGGCCA-AGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGC------------GAAUGCGAGUGCCAAUUUGCAGUUCUC
-----..((((((.(((.(..........(((((.-....((.....)).....)))))......((....))).))).))------------))))((((((....))))))....... ( -24.70)
>DroEre_CAF1 61831 112 + 1
---UGCCAUUUGCCGU-----UAUCAAACUGGCCAAAGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGCAACAGCGAAUGCGAAUGCGAGGGCCAAUUUGCAGUUCUC
---(((((..((..((-----(....)))(((((..((..((.....)).))..)))))..))..)))))...(((...((....))...)))(((((((((......)))))).))).. ( -27.80)
>DroYak_CAF1 65815 119 + 1
CCAUUCCAUUGGCCGUUUCAUUAUCAAACUGGCCAAAGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGUAAUAGCAACAGC-AAUGCGAGGGCCAAUUUGCAGUUCUC
........((((((((((.......)))).))))))(((((.....(((.((...(((((....)))))...)))))........((....))-..((((((......))))))))))). ( -28.60)
>consensus
_____CCAUUCGCCGUUUCAUUAUCAAACUGGCCA_AGAACAUAAUUUGACUAAGGCCAAACAUUUGGCAACAGCAACAGC____________GAAUGCGAGGGCCAAUUUGCAGUUCUC
...........(((((((.......)))).)))...(((((.....(((.((...(((((....)))))...)))))...................((((((......))))))))))). (-20.24 = -20.84 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:28 2006