Locus 3566

Sequence ID 3R_DroMel_CAF1
Location 9,667,596 – 9,667,704
Length 108
Max. P 0.500000
window5730

overview

Window 0

Location 9,667,596 – 9,667,704
Length 108
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 86.34
Mean single sequence MFE -28.85
Consensus MFE -17.88
Energy contribution -18.12
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9667596 108 - 27905053
CAUUAGCCGCACUGUGCGGCAUUGACCUGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG-CCAAAUGGC----------UGCACAGGAAAAUAAAUACAAAAAUUC
.....(((((.....))))).....((((((...((((.(((......)))))))..((......))...((-((....)))----------))).))))................... ( -29.10)
>DroSec_CAF1 59407 108 - 1
CAUUAGCCGCACUGUGCGGCAUUGACCCGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG-CCAAAUGGC----------UGCACAGGAAAAUAAAUUCAAAAAUUC
.....(((((.....))))).((((....(((.....))).......(..(((....((......))...((-((....)))----------).)))..).........))))...... ( -27.10)
>DroSim_CAF1 62309 108 - 1
CAUUAGCCGCACUGUGCGGCAUUGACCCGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG-CCAAAUGGC----------UGCACAGGAAAAUAAAUACAAAAAUUC
.....(((((.....)))))......((.(((.....)))..........(((....((......))...((-((....)))----------).))).))................... ( -26.80)
>DroYak_CAF1 64102 115 - 1
---UAGCCGCACGGUGCGGCAUUGACCCGGCCUAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAAAAGGCCCAAUGAUCUCCGGCAUGCGCACAG-AGAAGAAGUAUUGAAAAUC
---..(((((.....)))))........(((((.((((.(((......)))))))..((......))...)))))(((((.((((.(((....)).).)-))).....)))))...... ( -32.40)
>consensus
CAUUAGCCGCACUGUGCGGCAUUGACCCGGCCAAAUCGGCGAUAAGACUCGUGAUAAGCAAACACGCAUAAG_CCAAAUGGC__________UGCACAGGAAAAUAAAUACAAAAAUUC
.....(((((.....))))).....((.(((...((((.(((......)))))))..((......))..........................)).).))................... (-17.88 = -18.12 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:23 2006